| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1161 |
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| Symbol | |
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| ID | 6110080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1280019 |
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| End bp | 1282283 |
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| Gene Length | 2265 bp |
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| Protein Length | 754 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641620926 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001748035 |
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| Protein GI | 170720347 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3300] MHYT domain (predicted integral membrane sensor domain)
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.268415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0126902 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATGGC TGGGACTGCA ACTGTTCTCC GATGTGCCGG CTAGCGGTAG CATCGTTATC
GACTGCCGTC ATGAACCACT ACTGATACTG ATCGCCTTCG CCGTGGCCAG CGCTGCCTGC
TTTGCCACTC TGGACATGGC CGAGCGCCAA TCCCATAGCG AACAACCGGC TGCACAGAGG
CAATGGCGCA TGCTGGGTGC CTGCTGTCTG GCCGGGGGGA TCTGGGCGAT GCATTTCATC
AGCATGCTGG CGTTCAGGGC ACCGCTGGAA ATGCACTACG ACGCCTCGCT GAGCGGCCTT
TCGCTGCTGA TTGCACTGGG TGTGGCCTGG ATGGCGATGA CCAGCCTCGA TCGCGAGCGC
ATGGGGCCGC AACATTACCT GCAAAGCGCC ATGCTGATCG GCCTGGGTAT CATCCTCATG
CATTTTGTCG GCATGGCGGC GCTGCAGACC GGGGCCAAGC AGTACTACCA AACCGAGCTG
TTGCTGGCCA GCACGGCCAT CGCCCTGCTG ACCAGCCTGG CCGCACTGCT GATGGCCCGC
TACTTCAGCA ACGGAAGCGG CACTGTGCAT CAAGCCCTGA AATATGGCGC GAGCCTGCTC
ATGGCAGGTG GCATCGTTGC CACCCATTTC ACCGCAATGG CCGCGATGAC GCTGGTCATT
CCTGCCGACA CCGCCCTGCG CTTGCCCTCA GCCGACAACA GCCTGCAACT GGGCCTGACC
GTCGCCTTCA TCACCCTACT GATCAGTGCA AGCAGCATCA GCGCTGCTTT GGCCGACAAA
AAGCTGCAGA GCAAGGAACA CGACCTGCGC AGGGTGAATA TGCTGCTCAG CCAACTGGAC
CAGGCCCGCG CCTCTTTGCA GCAAGCCGCT CACTACGATG CACTGACCAG CCTGGTCAAC
CGTCGAGGTT TCAACCAGGT GTTCGCCGAA CGTCTGGCCG AACAGAACCC CGAAGTGCAC
CGCCTGGCGG TGATGTTCCT AGACATCGAC CATTTCAAAC GGATCAACGA CAGTCTCGGC
CATGACGCCG GTGACCAACT GCTCAAGGTG ATCGCCAGCC ATATCAAAGC GGCCACACGC
AGCCACGACC TGGTGGCACG CTTCGGCGGG GACGAGTTCT GCGTGGTTAC CAGCCTCAAT
GGGCCTGACG AAGCTCGCCA TCTGGCACAG CGCATCATGC AGCGCATGAA GGACCCCATC
GACCTGGGCG GGCGGCGCAT GGTCATGACC ACCAGCATCG GCGTCAGCAT TTACCCCGAC
GACGGCCTTA CCGCTGAAGA GCTGCTCAAG CACGCCGACC TTGCCCTCTA TCAATCCAAG
GGCAGCGGGC GCAACAGCCT GCACTTTTTC AACAGCGGCC TGAAAAATCG CGCCACCCTT
GAACTGCAAC TGGAAGAAGA ACTGCGCATC GCCTTGCTTG AAGAGCGTGG GCTGCGCGTG
CATTACCAGC CCATCTACGA TCTGCGTACC GGACAGGTAG CCAAGCTTGA AGCGCTGGTA
CGCTGGCAGC ACCCGCAGCA TGGGCTGCTG AGCCCGGACC GGTTCATCGG CATTGCCGAA
GCCAACGGCC TGATCGTCGA CCTGGACCTG TGGGTGTTGC GCCACGCCTG TGATGACCTG
GCGCAGTTGC ATCGCCATGG CTTCGCCGAC CTCAAGCTCA CGGTCAACTG CTCAGCGGTG
ACACTGGGCC ATGACGGGTT GCCCAAAGAA GTGGAAATGG CACTGTTCCA AGCGGGCCTG
GCACCTAGAC ACCTGGAACT TGAGGTCACC GAGAATGCCC TGATGGGTGA CATCCAGCGC
ACGCTCAGCC TGCTCAAGCG AATTCGTGGC CAAGGTGTCA GCCTTTCGAT CGATGACTTC
GGCACAGGGT ACTCGTCACT GGCTTACCTC AAGCGCCTGC CTCTGGACGT CCTCAAGATC
GACCGTAGCT TCCTTCAGGA CGTACCTGCC AGCCTGAAGG ACCGTGAGAT CGTGCAGGCG
ATCATCGCAA TGGCCCATAC CCTGCATCTT CAGGTGGTCA GCGAGGGTGT AGAAACTGTC
GAGCAACATG AGTTTCTGGC CGCCAACGGC TGCGACTACC TGCAGGGCTA CCTGCTTAGC
CGGCCGGTAC CGCTGGCGGA CCTGCGGCCG ATCCTGGAGC GGCTCGACCG CCAGGAAGAA
GCCTTCAGTG CTTGTTGCGA TACAGCTCTA CCAGGGTCGC CGGATCTTTT TGCAGATAAC
CCTGGCTACC GTGCAGGCGC ATCAATTGCG CGGCGAGACC ACTGA
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| Protein sequence | MEWLGLQLFS DVPASGSIVI DCRHEPLLIL IAFAVASAAC FATLDMAERQ SHSEQPAAQR
QWRMLGACCL AGGIWAMHFI SMLAFRAPLE MHYDASLSGL SLLIALGVAW MAMTSLDRER
MGPQHYLQSA MLIGLGIILM HFVGMAALQT GAKQYYQTEL LLASTAIALL TSLAALLMAR
YFSNGSGTVH QALKYGASLL MAGGIVATHF TAMAAMTLVI PADTALRLPS ADNSLQLGLT
VAFITLLISA SSISAALADK KLQSKEHDLR RVNMLLSQLD QARASLQQAA HYDALTSLVN
RRGFNQVFAE RLAEQNPEVH RLAVMFLDID HFKRINDSLG HDAGDQLLKV IASHIKAATR
SHDLVARFGG DEFCVVTSLN GPDEARHLAQ RIMQRMKDPI DLGGRRMVMT TSIGVSIYPD
DGLTAEELLK HADLALYQSK GSGRNSLHFF NSGLKNRATL ELQLEEELRI ALLEERGLRV
HYQPIYDLRT GQVAKLEALV RWQHPQHGLL SPDRFIGIAE ANGLIVDLDL WVLRHACDDL
AQLHRHGFAD LKLTVNCSAV TLGHDGLPKE VEMALFQAGL APRHLELEVT ENALMGDIQR
TLSLLKRIRG QGVSLSIDDF GTGYSSLAYL KRLPLDVLKI DRSFLQDVPA SLKDREIVQA
IIAMAHTLHL QVVSEGVETV EQHEFLAANG CDYLQGYLLS RPVPLADLRP ILERLDRQEE
AFSACCDTAL PGSPDLFADN PGYRAGASIA RRDH
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