| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1160 |
|---|
| Symbol | |
|---|
| ID | 6110079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1279232 |
|---|
| End bp | 1280119 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641620925 |
|---|
| Product | 3-hydroxyisobutyrate dehydrogenase |
|---|
| Protein accession | YP_001748034 |
|---|
| Protein GI | 170720346 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.206524 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0135112 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTG AACTGCCTTC GCTTGGATTC GCCGGGATTG GCCTGATGGG GCTGCCGATG
TGTCGGCGCC TGCTGGCCGC AGGTTACCCG CTGACCGTCT GGAACCGAAG CCCGGACAAG
TGTGCCGAGC TGGTGGCGGC TGGCGCGCGG CTGGCTGCCG ATCCTGCCGA GTTGTGCCGT
GGCAGCGACA TGGTGCTGCT GTGCCTGGCC GATACGGCGG TGGTACGCGA GGTGGTTTTC
GGCGAGCAAG GTATCGCCCA GGGAGGGCGC AGCGGGCAAC TGCTTGTCGA CTTGTCCAGC
CTTGAACCGA CCGCCACCCG CGAGATGGCT GCCGAACTGG CCGCCCTGTG TGGCATGGCT
TGGCTGGATG CACCCGTCTC CGGTGGCACG CCAGGCGCCG AGGCCGGCAC CCTGGCGATC
ATGGTCGGCG GCGAGGCTGC CGACCTGGAG CGAGCGCGCC CGGTGTTGCT TACCCTTGGC
CAGCGGGTCA CGCACATGGG CGGGGTGGGG GCGGGGCAGG TGACCAAGGC CTGCAATCAG
ATGATCGTGG CCTGCAATGC CTTGGTGATT GCTGAAGTCG TGGCGTTGGC CGAGCAGTCA
GGTGTGGACG CAACACTCAT CGCCGAAGCC CTGGCCGGTG GTTTTGCCGA CTCCAGGCCG
CTGCAGATCC TGGCACCGCA GATGGCCGAA AGCCGTTTCG AACCGGTGAA ATGGCACGTA
CGCACGCTGC TCAAGGACCT CGACGGTGCG GTCAAGTTCT CCCGCGAACA GGGCACGGCG
ACCCCTCTCA GTGGTCTCGC CGCGCAATTG ATGCGCCTGC ACGGTAGCCA GGGTTATCTG
CAAAAAGATC CGGCGACCCT GGTAGAGCTG TATCGCAACA AGCACTGA
|
|---|
| Protein sequence | MSTELPSLGF AGIGLMGLPM CRRLLAAGYP LTVWNRSPDK CAELVAAGAR LAADPAELCR
GSDMVLLCLA DTAVVREVVF GEQGIAQGGR SGQLLVDLSS LEPTATREMA AELAALCGMA
WLDAPVSGGT PGAEAGTLAI MVGGEAADLE RARPVLLTLG QRVTHMGGVG AGQVTKACNQ
MIVACNALVI AEVVALAEQS GVDATLIAEA LAGGFADSRP LQILAPQMAE SRFEPVKWHV
RTLLKDLDGA VKFSREQGTA TPLSGLAAQL MRLHGSQGYL QKDPATLVEL YRNKH
|
|---|
| |