Gene PputW619_1073 details

Gene Information

• Locus tag: PputW619_1073
• Symbol: rnc
• ID: 6109992
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida W619
• Kingdom: Bacteria
• Replicon accession: NC_010501
• Strand: +
• Start bp: 1179684
• End bp: 1180373
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 641620838
• Product: ribonuclease III
• Protein accession: YP_001747947
• Protein GI: 170720259
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 33
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 42
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGTGCTT CCCTTGCCCG TCTCGAGCGC AAGCTCGGTT ACACCTTCAA AGACCAGGAC 
CAGATGGTGC TGGCCCTGAC CCATCGCAGC TACGCCGGGC GCAACAATGA GCGCCTGGAG 
TTTCTCGGTG ATGCCATTCT CAACTTCGTG GCCGGCGAGG CGCTGTTCGA GCGCTTCCCG 
CAGGCCCGCG AAGGCCAGCT GTCGCGCTTG CGTGCCCGCT TGGTCAAGGG CGAGACCCTG 
GCCCGGCTCG CTCGCGGTTT CGACCTGGGT GAGTACCTGC GCCTGGGTTC CGGTGAACTC 
AAGAGCGGCG GTTTCCGCCG CGAGTCGATC CTGGCCGATG CCCTCGAAGC CCTGATCGGC 
GCCATCTACC TTGATGCCGA CATGCAGACC GCTCGCGAGC GTGTGTTGGC CTGGCTGACT 
GACGAGTTCG AAAGCCTGAC CCTGGTCGAC ACCAACAAAG ACCCGAAAAC CCGCCTGCAG 
GAGTTCCTGC AGTCGCGTAG CTGTGAGCTG CCTCGTTACG AGGTGGTGGA CATCCAGGGC 
GAACCGCACT GCCGTACCTT CTTCGTCGAA TGCGAAGTGG TGCTGCTGAA CAACAAGAGC 
CGTGGCCAGG GCGTTAGCCG GCGTATTGCC GAGCAAGTCG CCGCCGCCGC CGCATTGATC 
GCCCTGGGCG TGGAGAATGG CAATGACTGA 

 

Protein sequence

MSASLARLER KLGYTFKDQD QMVLALTHRS YAGRNNERLE FLGDAILNFV AGEALFERFP 
QAREGQLSRL RARLVKGETL ARLARGFDLG EYLRLGSGEL KSGGFRRESI LADALEALIG 
AIYLDADMQT ARERVLAWLT DEFESLTLVD TNKDPKTRLQ EFLQSRSCEL PRYEVVDIQG 
EPHCRTFFVE CEVVLLNNKS RGQGVSRRIA EQVAAAAALI ALGVENGND