| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1018 |
|---|
| Symbol | |
|---|
| ID | 6109936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1119691 |
|---|
| End bp | 1120980 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641620782 |
|---|
| Product | major facilitator superfamily metabolite/H(+) symporter |
|---|
| Protein accession | YP_001747892 |
|---|
| Protein GI | 170720204 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00010389 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCAA CCTATTACAC CGGCGAAGAG CGCAGTAAGC GCATCTTCGC CATCGTCGGT
GCCTCTTCAG GCAACCTGGT GGAATGGTTC GACTTCTATG TCTACGCCTT CTGTGCAATC
TATTTTGCCC CGGCCTTCTT CCCCTCTGAC GACCCCACTG TTCAATTGCT CAATACCGCT
GGCGTGTTCG CCGCTGGCTT CCTGATGCGG CCTATCGGTG GCTGGATCTT CGGTCGCCTG
GCGGACCGCC ATGGCCGCAA GAATTCCCTG ATGATCTCGG TGCTGATGAT GTGCTTCGGC
TCCTTGATGA TTGCCTGTTT ACCCACCTAC TCGAGCATTG GCACCTGGGC CCCGGCGCTG
CTGTTGCTGG CCCGTTTGAT CCAGGGCCTG TCGGTAGGCG GTGAGTACGG CACTACCGCG
ACCTACATGA GTGAAGTAGC GCTGCGCGGC CAGCGCGGCT TCTTTGCTTC CTTCCAGTAC
GTCACGCTGA TCGGTGGCCA ACTGCTTGCC GTGCTGGTGG TGGTGATCCT CCAACAATTG
CTGACCGAAG ACGAACTGCG CGCCTGGGGC TGGCGCATTC CGTTCGTGGT CGGTTCCATT
GCTGCGCTGA TCTCGCTGAT GCTGCGCCGC TCGCTGCACG AGACCAGCAG CGCCGAAACC
CGCAAGGACA AGGACGCTGG CTCCATCAAA GGCCTGTTCC GCAACCACAC GGCTGCCTTC
ATCACCGTGC TCGGCTATAC CGCCGGTGGC TCGCTGATCT TCTATACCTT CACTACGTAC
ATGCAGAAGT ACCTGGTCAA CACTGCGGGC ATGACCGCGA AGAACGCCAG CTTCGTGATG
ACCGGCGCCT TGTTCCTGTA CATGGTGATG CAGCCGTTCT TCGGCATGCT CTCCGACCGT
ATCGGGCGAC GTAACTCGAT GCTGCTGTTC GGTGCCTTGG GGACGCTGTT CACCGTGCCG
TTGCTGATGG CGTTGAAGAC CGTCAGCAGC CCGTTCATGG CCTTCGTACT GGTGACCCTG
GCACTGTGCA TCGTCAGTTT CTACACCTCG ATCAGTGGCC TGGTGAAGGC CGAGATGTTC
CCGCCGCAGG TGCGTGCGCT TGGTGTAGGC CTGGCTTACG CGGTAGCCAA CGCAATGTTC
GGCGGCTCGG CCGAGTATGT GGCCCTGGGC TTGAAAAGCC TGGGTATGGA GAACACCTTT
TACTGGTACG TGACGGCGAT GATGGCAATC GCGTTCCTGT TCAGCCTGCG TCTGCCTAAA
CAGGCGGCGT ACCTGCACCA TGATGATTAA
|
|---|
| Protein sequence | MTSTYYTGEE RSKRIFAIVG ASSGNLVEWF DFYVYAFCAI YFAPAFFPSD DPTVQLLNTA
GVFAAGFLMR PIGGWIFGRL ADRHGRKNSL MISVLMMCFG SLMIACLPTY SSIGTWAPAL
LLLARLIQGL SVGGEYGTTA TYMSEVALRG QRGFFASFQY VTLIGGQLLA VLVVVILQQL
LTEDELRAWG WRIPFVVGSI AALISLMLRR SLHETSSAET RKDKDAGSIK GLFRNHTAAF
ITVLGYTAGG SLIFYTFTTY MQKYLVNTAG MTAKNASFVM TGALFLYMVM QPFFGMLSDR
IGRRNSMLLF GALGTLFTVP LLMALKTVSS PFMAFVLVTL ALCIVSFYTS ISGLVKAEMF
PPQVRALGVG LAYAVANAMF GGSAEYVALG LKSLGMENTF YWYVTAMMAI AFLFSLRLPK
QAAYLHHDD
|
|---|
| |