| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0940 |
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| Symbol | |
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| ID | 6109858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 1033904 |
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| End bp | 1035271 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641620704 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_001747814 |
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| Protein GI | 170720126 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.47508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTAAGC CCATGACACT CAGCCAACTG ACCGCAGCAC TGAGCGCTCG CCTGGTCGGC
GCAGATGCCA GCTTCAGCGG TGTCAGCATC GACAGCCGCA GCGTCGGCGC CGGGGAGTTG
TTCGTCGCCT TGGCGGGGCC GCGTTTCGAT GGCCATGACT ACCTGGCCGA TGTGCAGGCC
AAGGGCGCTG TAGCAGCGCT GGTGGAGCGT GAAGTGGCCA ATGTCGACCT GCCGCAACTG
GTGGTTGCCG ACAGCCGTCT GGCCCTCGGC CAGCTCGGTG CGCTGAACCG TGCCGGCTAC
GACAAACCTG TGGTAGCGAT TACCGGCTCC AGCGGCAAGA CCACGGTCAA AGAGATGCTT
GCCTGCATCC TGCGTACCCG TGGCCCTGTT CATGCCACCC GTGGCAACCT GAACAACGAC
CTGGGAGCAC CGCTGACCCT GCTGGAGATT GCCCCGCAGC ACAGCGCCGC CGTCATTGAG
CTGGGCGCCT CGCGCATTGG CGAGATCCGC TATACCGTGG GCCTCACCCA ACCCCAGGTG
GTCATCATCA ACAACGCCGG TACTGCCCAC GTCGGCGAGT TCGGCGGGCC AGAGAAGATC
GTTGAAGCCA AGGGCGAGAT TCTCGAAGGG CTGGGCGAGG GTGGCACGGC CATCCTCAAC
CTGGATGACA AGGCCTTTGC CATCTGGAAG GCGCGCGCGG CTGCCCACAA GGTCATCAGT
TTTGCCCGCA GCGACGCCCG CGCCGACTTC CATGCCACCG ACATTGGGCG CGACGCGCGG
GGTTGCCCGT CGTTCACACT GCATGGCGCC GGCGCATCGG TGGCCGTGCA GCTCAATGTG
CTCGGTGAGC ATAACGTCAG CAACGCCTTG GCCGCCGCCG CCGCCGCCCA TGCCGTTGGT
CTGAGCCTGA GCGGTATTGC CGCCGGCCTG AACGCCATGC AGCCGGTCAA GGGCCGTACC
GTGGCGCAAA TCGCCCCGAG TGGCGTGCGC GTGATTGATG ACAGTTACAA CGCAAATCCC
ACCTCGATGT GCGCGGCCAT TGATATACTC GCCGGCTTTT CCGGTCGCAC CGTTCTGGTG
CTGGGGGATA TCGGCGAGCT GGGGCAGTGG GCGGAAGAAG GCCACCGTCA GGTGGGCGAT
TACGCGCGCG GTAAGGTCGA TGCCCTGTAT GCAGTGGGTA CCAACATGAC ACATGCGGTC
AAGGCGTTCG GCGCCAATGG CCGTCATTTC GCAACTCAAG CTGAGCTGAT CGAGGCCGTT
CGTGCCGAAA CTGCCAGCAA CACCACTATC TTGATCAAGG GCTCGCGCAG CGCTGCGATG
GAAAACGTCG TGGCTGCATT GTGCGGTGCC AGCGGGGAGA AACATTAA
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| Protein sequence | MLKPMTLSQL TAALSARLVG ADASFSGVSI DSRSVGAGEL FVALAGPRFD GHDYLADVQA
KGAVAALVER EVANVDLPQL VVADSRLALG QLGALNRAGY DKPVVAITGS SGKTTVKEML
ACILRTRGPV HATRGNLNND LGAPLTLLEI APQHSAAVIE LGASRIGEIR YTVGLTQPQV
VIINNAGTAH VGEFGGPEKI VEAKGEILEG LGEGGTAILN LDDKAFAIWK ARAAAHKVIS
FARSDARADF HATDIGRDAR GCPSFTLHGA GASVAVQLNV LGEHNVSNAL AAAAAAHAVG
LSLSGIAAGL NAMQPVKGRT VAQIAPSGVR VIDDSYNANP TSMCAAIDIL AGFSGRTVLV
LGDIGELGQW AEEGHRQVGD YARGKVDALY AVGTNMTHAV KAFGANGRHF ATQAELIEAV
RAETASNTTI LIKGSRSAAM ENVVAALCGA SGEKH
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