Gene PputW619_0780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0780 
Symbol 
ID6109697 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp871826 
End bp872545 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content62% 
IMG OID641620544 
Productprotocatechuate 3,4-dioxygenase, beta subunit 
Protein accessionYP_001747654 
Protein GI170719966 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3485] Protocatechuate 3,4-dioxygenase beta subunit 
TIGRFAM ID[TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.672386 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCCC AGGACAACAG CCGCTTCGTG ATCCGTGATC GCAACTGGCA CCCCAAGGCC 
CTGACGCCCG ACTACAAGAC TTCCATTGCC CGCTCGCCGC GCCAGGCATT GGTCAGCATC
CCGCAGTCGA TCAGCGAAAC CACCGGCCCG GACTTCACCC ACCTGGGCTT CGGCGCCCAC
GACCATGACC TGCTGCTGAA CTTCAACAAC GGCGGCCTGC CGATTGGTGA GCGCATCATC
GTTGCCGGCC GTGTCGTCGA CCAGTACGGC AAGCCAGTGC CCAATACCTT GGTAGAAATG
TGGCAGGCCA ACGCCGGTGG CCGCTATCGC CACAAGAACG ATCGCTATCT GGCCCCGCTG
GACCCGAATT TCGGTGGCGT CGGCCGCTGC CTGACCAACA GTGAAGGCTA CTACAGCTTC
CGCACCATCA AGCCCGGCCC ATACCCATGG CGCAACGGCC CGAACGACTG GCGCCCGGCG
CACATCCACT TCGGCATAAG CGGCCCGTCA ATCGCCACCA AGCTGATCAC TCAGCTGTAT
TTCGAGGGCG ATCCGCTGAT CCCGATGTGC CCTATCGTCA AGTCGATCGC CAACCCTGAA
GCGGTGCAGC AACTGATCGC CAAGCTCGAC ATGAGTAACG CCAACCCCAT GGATTGCCTG
GCGTACCGCT TCGACATCGT GCTGCGCGGC CAGCGCAAGA CCCACTTCGA AAACTGCTGA
 
Protein sequence
MPAQDNSRFV IRDRNWHPKA LTPDYKTSIA RSPRQALVSI PQSISETTGP DFTHLGFGAH 
DHDLLLNFNN GGLPIGERII VAGRVVDQYG KPVPNTLVEM WQANAGGRYR HKNDRYLAPL
DPNFGGVGRC LTNSEGYYSF RTIKPGPYPW RNGPNDWRPA HIHFGISGPS IATKLITQLY
FEGDPLIPMC PIVKSIANPE AVQQLIAKLD MSNANPMDCL AYRFDIVLRG QRKTHFENC