Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0780 |
Symbol | |
ID | 6109697 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 871826 |
End bp | 872545 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641620544 |
Product | protocatechuate 3,4-dioxygenase, beta subunit |
Protein accession | YP_001747654 |
Protein GI | 170719966 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
TIGRFAM ID | [TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.672386 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCCC AGGACAACAG CCGCTTCGTG ATCCGTGATC GCAACTGGCA CCCCAAGGCC CTGACGCCCG ACTACAAGAC TTCCATTGCC CGCTCGCCGC GCCAGGCATT GGTCAGCATC CCGCAGTCGA TCAGCGAAAC CACCGGCCCG GACTTCACCC ACCTGGGCTT CGGCGCCCAC GACCATGACC TGCTGCTGAA CTTCAACAAC GGCGGCCTGC CGATTGGTGA GCGCATCATC GTTGCCGGCC GTGTCGTCGA CCAGTACGGC AAGCCAGTGC CCAATACCTT GGTAGAAATG TGGCAGGCCA ACGCCGGTGG CCGCTATCGC CACAAGAACG ATCGCTATCT GGCCCCGCTG GACCCGAATT TCGGTGGCGT CGGCCGCTGC CTGACCAACA GTGAAGGCTA CTACAGCTTC CGCACCATCA AGCCCGGCCC ATACCCATGG CGCAACGGCC CGAACGACTG GCGCCCGGCG CACATCCACT TCGGCATAAG CGGCCCGTCA ATCGCCACCA AGCTGATCAC TCAGCTGTAT TTCGAGGGCG ATCCGCTGAT CCCGATGTGC CCTATCGTCA AGTCGATCGC CAACCCTGAA GCGGTGCAGC AACTGATCGC CAAGCTCGAC ATGAGTAACG CCAACCCCAT GGATTGCCTG GCGTACCGCT TCGACATCGT GCTGCGCGGC CAGCGCAAGA CCCACTTCGA AAACTGCTGA
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Protein sequence | MPAQDNSRFV IRDRNWHPKA LTPDYKTSIA RSPRQALVSI PQSISETTGP DFTHLGFGAH DHDLLLNFNN GGLPIGERII VAGRVVDQYG KPVPNTLVEM WQANAGGRYR HKNDRYLAPL DPNFGGVGRC LTNSEGYYSF RTIKPGPYPW RNGPNDWRPA HIHFGISGPS IATKLITQLY FEGDPLIPMC PIVKSIANPE AVQQLIAKLD MSNANPMDCL AYRFDIVLRG QRKTHFENC
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