| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0770 |
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| Symbol | |
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| ID | 6109687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 861768 |
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| End bp | 862256 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641620534 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001747644 |
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| Protein GI | 170719956 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.827402 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.719805 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTTG ATGCATACAT TCAGATCGAC ACCATTCCAG GTGAAGCACT GGACGAGAAA
TACAAAAAAT GGATTGAAGT AATTGGTTAC GATTTTGGCG TCAGCCAAAG CACATCCGCC
ACTGCGAGCT CCGCCGGGGG CGCTACATCT GGGCGCACCA CCGTAACCAA CTTCACTTTC
AGGAAATATC TCGACAGTGC CAGTTGCAAA CTGATGGAGG CCAGTTGTAC CGGGCAACAC
TTAAAGGAAG TGAAACTGGC GCTCTGTCGC GCCGGAGGCG ATAAACTGAA ATATTACGAA
ATCATTCTTG AAGAAGTGAT TATCGCCGAA TATTCGCAGT GCGTTGACAC GGGCGTACCG
CTGGAAGTGG TGCAGCTCAA TTACGGCCGC ATCAAGACCA CCTACACTCA GCAGCGGCGC
CTTGATGGCG CCGGCGGCGG CAATGTCGCT GGAGGTTGGG ACCGTATCGG TAACAAAAAG
TACGCGTGA
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| Protein sequence | MAFDAYIQID TIPGEALDEK YKKWIEVIGY DFGVSQSTSA TASSAGGATS GRTTVTNFTF
RKYLDSASCK LMEASCTGQH LKEVKLALCR AGGDKLKYYE IILEEVIIAE YSQCVDTGVP
LEVVQLNYGR IKTTYTQQRR LDGAGGGNVA GGWDRIGNKK YA
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