Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0725 |
Symbol | |
ID | 6109637 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 798557 |
End bp | 800662 |
Gene Length | 2106 bp |
Protein Length | 701 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641620484 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001747599 |
Protein GI | 170719911 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.959792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0305384 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCCGG TAATCAAGAA ATTCCAGTTC GGTCAATCGA CCGTTACTCT CGAAACGGGC CGCATTGCCC GTCAGGCAAC CGGCGCCGTG CTGGTTACCG TCGACAACGA TGTCACCGTG CTGGTGACCG TGGTCGGTGC CAAGCAGGCC GATCCAGGCA AGGGCTTCTT CCCTCTGTCG GTCCACTACC AGGAAAAGAC CTACGCCGCC GGCAAGATCC CGGGTGGCTT CTTCAAGCGC GAAGGCCGTC CTTCCGAGAA AGAGACGCTG ACCTCGCGCC TGATCGACCG TCCGATCCGC CCGCTGTTCC CTGAAGGCTT CATGAACGAA GTCCAGGTCG TCTGCACCGT GGTATCGACC AGCAAGAAGA CCGATCCGGA CATCGCTGCG ATGATCGGTA CCTCGGCTGC GCTTGCCATC TCCGGCATCC CATTCGAAGG CCCGATCGGC GCTGCCCGTG TTGCCTTCCA CGAAAGCACC GGCTACCTGC TGAACCCGAC TTACGAGCAG CTGGCCGCCT CGAGCCTGGA CATGGTCGTT GCCGGTACTT CCGACGCCGT GCTGATGGTT GAATCGGAAG CCCAAGAGCT GACCGAAGAC CAGATGCTGG GCGCTGTACT GTTCGCCCAC GACGAATTCC AGGCCGTTAT CCAGGCTGTC AAAGAGCTGG CTGCCGAAGC TGGCAAGCCG ACCTGGGACT GGAAACCTGC CGTTGCCAAC ACCGAGCTGT TCAACGCCAT TCGCGCTGAA TTCGGCGAAG CCGTTTCGCA GGGCTACACC ATCACCGTCA AGGCCGACCG CTACGCGCGC CTGGGCGAGC TGCGTGACCA GGCGATCGCC AAGTTCTCCG GTGAAGAAGG CCAGCCATCG GCCAGCGAAG TAAAAGAAAT CTTCGGTGAG ATCGAATACC GCACCGTTCG CGAAAACATC GTCAACGGCA AGCCGCGTAT CGATGGTCGT GACACCAAGA CCGTTCGCCC GCTGAACATC GAAGTCGGCG TTCTGCCGAA GACGCACGGT TCGGCACTGT TCACCCGTGG TGAAACCCAG GCCCTGGTCG TCGCGACCCT GGGTACTGCC CGTGACGCCC AGCTGCTGGA CACCCTCGAA GGCGAGAAGA AAGACCCCTT CATGCTGCAC TACAACTTCC CGCCGTTCTC GGTGGGCGAG TGTGGTCGCA TGGGCGGTGC TGGCCGTCGT GAAATCGGTC ACGGCCGCCT GGCCCGCCGC TCGGTCCAGG CCATGCTGCC TGCCGCTGAC GTGTTCCCGT ACACCATCCG TGTGGTGTCG GAAATCACCG AGTCCAACGG TTCCAGCTCC ATGGCGTCGG TCTGCGGTGC TTCCCTGGCA CTGATGGATG CCGGTGTACC GATGAAGGCA CCGGTAGCCG GTATCGCCAT GGGCCTGGTC AAGGAAGGCG AGAAGTTCGC AGTCCTGACC GACATCCTGG GTGACGAAGA CCACCTGGGC GACATGGACT TCAAGGTTGC CGGTACTGCC AAAGGCGTTA CCGCACTGCA GATGGACATC AAGATCAACG GCATCACCGA AGAGATCATG GAGATCGCCC TGGGCCAGGC CCTGGAAGCG CGCCTGAACA TCCTCGGCCA GATGAACCAG ATCATTGGCC AGTCGCGTAC CGAGCTGTCG GCCAACGCCC CGACCATGAT CGCGATGAAG ATCGACACCG ACAAGATTCG TGACGTCATC GGTAAAGGCG GCGCCACCAT TCGCGCCATC TGCGAAGAGA CCAAGGCTTC GATCGATATC GAAGACGATG GCTCGATCAA GATCTTCGGC GAAACCAAAG AAGCTGCAGA GGCAGCGCGT CAGCGCGTTC TGGGCATCAC CGCTGAAGCC GAGATCGGCA AGATCTACGT GGGCAAGGTC GAGCGTATCG TCGACTTCGG CGCCTTCGTC AACATCCTGC CTGGCAAGGA CGGCCTGGTA CACATCTCCA TGCTCAGCGA TGCGCGCGTA GAGAAAGTGA CCGATATCCT GAAAGAAGGT CAGGAAGTCG AAGTGCTGGT ACTGGACGTG GACAACCGCG GCCGTATCAA GCTGTCGATC AAAGACGTTG CCGCGGCCAA GGCCTCGGGC GTCTAA
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Protein sequence | MNPVIKKFQF GQSTVTLETG RIARQATGAV LVTVDNDVTV LVTVVGAKQA DPGKGFFPLS VHYQEKTYAA GKIPGGFFKR EGRPSEKETL TSRLIDRPIR PLFPEGFMNE VQVVCTVVST SKKTDPDIAA MIGTSAALAI SGIPFEGPIG AARVAFHEST GYLLNPTYEQ LAASSLDMVV AGTSDAVLMV ESEAQELTED QMLGAVLFAH DEFQAVIQAV KELAAEAGKP TWDWKPAVAN TELFNAIRAE FGEAVSQGYT ITVKADRYAR LGELRDQAIA KFSGEEGQPS ASEVKEIFGE IEYRTVRENI VNGKPRIDGR DTKTVRPLNI EVGVLPKTHG SALFTRGETQ ALVVATLGTA RDAQLLDTLE GEKKDPFMLH YNFPPFSVGE CGRMGGAGRR EIGHGRLARR SVQAMLPAAD VFPYTIRVVS EITESNGSSS MASVCGASLA LMDAGVPMKA PVAGIAMGLV KEGEKFAVLT DILGDEDHLG DMDFKVAGTA KGVTALQMDI KINGITEEIM EIALGQALEA RLNILGQMNQ IIGQSRTELS ANAPTMIAMK IDTDKIRDVI GKGGATIRAI CEETKASIDI EDDGSIKIFG ETKEAAEAAR QRVLGITAEA EIGKIYVGKV ERIVDFGAFV NILPGKDGLV HISMLSDARV EKVTDILKEG QEVEVLVLDV DNRGRIKLSI KDVAAAKASG V
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