| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0567 |
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| Symbol | |
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| ID | 6109476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 625051 |
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| End bp | 626181 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641620324 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001747441 |
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| Protein GI | 170719753 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAGCG AGACCGCGAT CCTCGACGCC CATTACATGG CCCGTGCCCT GGAGCTTGCC
CGCAAGGGCA TCTACACCAC TCACCCCAAC CCGCGCGTGG GTTGTGTGAT CGTCCGTGAC
GGCGAAGTGG TGGGTGAGGG CTGGCATGTG CGCGCCGGTG AACCACATGC CGAGGTACAT
GCCCTGCGCC AGGCCGGTGA GCGTGCCCGC GGCGCCTGTG CCTACGTGAC GCTCGAGCCT
TGCAGCCACC ATGGCCGCAC CCCACCGTGC GCCGAAGCGC TGGTACAGGC AGGCGTAGCG
CGGGTGGTGG CAGCCATGCA GGACCCCAAC CCGCAAGTCG CCGGGCAGGG CCTGCGCCGC
CTGGCCGAAG CGGGCATCGA AGTCGCCAGC GGCGTGCTCG AAGCCCAGGC CCGTGCCCTG
AACCCCGGTT TCCTGAAGCG CATGGAGCAT GGCTTGCCGT TCGTGCGGGC CAAGCTGGCC
ATGAGCCTGG ATGGCCGCAC CGCAATGGCC AGCGGCGAAA GCCAATGGAT CACCGGCCCT
GCCGCCCGCT CTGCAGTGCA GCGCTTGCGT GCCAGTGCCA GCGTGGTGCT GACCAGCGCC
GCCAGCGTGC TGGCCGACAA CGCACGGATG ACCGTGCGCG GTGCCGAGTT GGGCCTGGAC
CCCGACGCCA CCGCGCTGGC GCTGAGCCGC ACCCCCCTGC GCGTGCTGAT CGATGGCCGC
CTGCGCCTGC CGCTGGACGC GCCGTTCTTC CAGGCCGGCC CTGCCCTGGT GGTAACCGCC
ATGGGGGACG ATACGCGGTA CGGCCAGGCT GGCCACGAGC TGCTCAGCCT GCCGGGCAGC
AATGGCCAGG TCGATCTGCT CGCCTTGATG CAGGCACTTG CAGCGCGTGG CGTCAACGAC
ATCCTGCTGG AAGCCGGCGC TGGCCTGGTC GGCGCTTTTG CCCAATTGGG CCTGATCGAC
GAGTACCAGC TGTTCGTCGC CGGCACCTTC CTTGGCTCCC AGGCCCGTCC GTTGCTGGAC
TGGCCACTGT CGAAGATGAG CGAAGCGCCA CGGCTGAAAA TCACCGAAAT GCGTGCAGTG
GGCGATGACT GGCGGGTCAC GGCCATCCCT CTGCCGGCGC CCGGCGTATA A
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| Protein sequence | MPSETAILDA HYMARALELA RKGIYTTHPN PRVGCVIVRD GEVVGEGWHV RAGEPHAEVH
ALRQAGERAR GACAYVTLEP CSHHGRTPPC AEALVQAGVA RVVAAMQDPN PQVAGQGLRR
LAEAGIEVAS GVLEAQARAL NPGFLKRMEH GLPFVRAKLA MSLDGRTAMA SGESQWITGP
AARSAVQRLR ASASVVLTSA ASVLADNARM TVRGAELGLD PDATALALSR TPLRVLIDGR
LRLPLDAPFF QAGPALVVTA MGDDTRYGQA GHELLSLPGS NGQVDLLALM QALAARGVND
ILLEAGAGLV GAFAQLGLID EYQLFVAGTF LGSQARPLLD WPLSKMSEAP RLKITEMRAV
GDDWRVTAIP LPAPGV
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