| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0559 |
|---|
| Symbol | |
|---|
| ID | 6109468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 619364 |
|---|
| End bp | 620629 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641620316 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001747433 |
|---|
| Protein GI | 170719745 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.641992 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCTGC TTCGCCTTGC CCTGGCCAGC CTGGCCAATC GTCGTTTCAC GGCGTTTCTC
ACCGCCTTCG CCATCGCCCT GTCGGTGTGC CTGTTGCTGG CCGTGGAACG TGTGCGCACC
GAAGCACGCG CCAGTTTCGC CAGCACCATC AGCGGCACCG ACCTGATCGT CGGCGCCCGC
TCGGGGTCGG TAAACCTGCT GCTGTATTCG GTATTCCGTA TCGGCAACGC CACCAACAAT
ATCCGTTGGG ACAGCTACCA GCATTACGCT CAGGACCCAC GGGTGAAGTG GGCGATTCCC
ATCTCGCTCG GCGACTCGCA CCGCGGGTAT CGAGTGATGG GCACCACCGC TGAGTACTTC
AGCCATTACC AGTACGGTCG CCGGCAGCAT CTGGAGCTGA GTCAGGGCCG TGAGTTCGCC
GGCGACCCGT TCGAGGTGGT GTTGGGCGCC GAGGTGGCCG AGGCGCTGCA CTACAGGCTT
GGCGACAAGC TGGTGCTTGC CCATGGTGTG GCGGCAATAA GCCTGGTCAA GCACGACGAC
AAGCCGTTCA CCGTGGTCGG CGTGCTCAAA CGCACCGGCA CACCGGTCGA CCGCACGTTG
CACATCAGCC TGGCGGGGAT GGAGGCGATC CATGTCGACT GGCATAACGG CGTGCCTGCA
CGTGGTGCCG GGCGCATCAG TGCCGAACAG GCTCGCGCCA TGGACCTGCA GCCCGCCGCG
ATCACCGCAT TCATGCTGGG CCTGAACAGC AAGATCGCCA CCTTCAGCCT GCAGCGCGAG
ATCAATGAAT ACCGCAGCGA GCCGCTGCTG GCGATCTTGC CCGGGGTAGC GCTGCAGGAG
TTGTGGAGCC TGATGGGCAC GGCCGAACAG GCGTTGTTCG TGGTCTCGCT GTTTGTCGTA
CTGACCGGTT TGATCGGCAT GCTCACGGCC ATTCTCACCA GCCTCAACGA ACGTCGCCGG
GAGATGGCGA TTCTGCGCTC GGTGGGGGCC CGGCCTTGGC ACATTGCCGG GTTACTGGTT
CTCGAAGCGC TGGCACTGGC AAGTGCCGGT ATCGTTGCCG GGCTTGGCCT GCTGTATGGC
GGCATCGCCC TCGCCCAAGG CTACGTTCAG GCCAATTACG GCCTGTACCT GCCGCTGGCC
TGGCCCAGCA CGCACGAGTG GACGCTGCTT GCTATCATCC TCGGCGCAGC GCTGCTGATG
GGCAGCGTGC CGGCCTGGCG CGCCTATCGG CAGTCGCTGG CCGATGGTCT GTCGATTCAC
CTCTGA
|
|---|
| Protein sequence | MYLLRLALAS LANRRFTAFL TAFAIALSVC LLLAVERVRT EARASFASTI SGTDLIVGAR
SGSVNLLLYS VFRIGNATNN IRWDSYQHYA QDPRVKWAIP ISLGDSHRGY RVMGTTAEYF
SHYQYGRRQH LELSQGREFA GDPFEVVLGA EVAEALHYRL GDKLVLAHGV AAISLVKHDD
KPFTVVGVLK RTGTPVDRTL HISLAGMEAI HVDWHNGVPA RGAGRISAEQ ARAMDLQPAA
ITAFMLGLNS KIATFSLQRE INEYRSEPLL AILPGVALQE LWSLMGTAEQ ALFVVSLFVV
LTGLIGMLTA ILTSLNERRR EMAILRSVGA RPWHIAGLLV LEALALASAG IVAGLGLLYG
GIALAQGYVQ ANYGLYLPLA WPSTHEWTLL AIILGAALLM GSVPAWRAYR QSLADGLSIH
L
|
|---|
| |