Gene PputW619_0542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0542 
Symbol 
ID6109450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp600641 
End bp601402 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content62% 
IMG OID641620298 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001747416 
Protein GI170719728 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.0795693 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTG CATTCGTGAC CGGCGCCTCC TCAGGCTTTG GCCGGGCCAT ATGCCGCACC 
CTGGTTGCCA AGGGCTATCG CGTGATCGGT GGCGCCCGCC GTATGGACAA GCTGCAGGCA
CTGGAGCATG AACTTGGCGA CAACTTCATT CCACTGGCGC TGGATGTGAC CGATGGGCAG
TCGATCAGCG CAGCGGTTTC GCAGATCAAC GAAGCTGCGC CGGCCATCGA TGTGCTGGTC
AACAACGCAG GGTTGGCGCT GGGTATCGAG CGGGCCCAGG CCTGCAGCGC CGAGAACTGG
CAGCGCATGA TCGACACCAA CATCACCGGC CTGGCCATGG TCACCCATGC GGTATTGCCG
CAGATGGTCC AGGCCGACAG CGGCATGATC ATCAACATTG GTTCGATTGC CGGCACTTAT
CCCTACCCGG GGGGCAACGT TTATGGCGCG AGCAAGGCGT TCGTGCGTCA GTTCAGCCTG
AACCTGCGCG CCGATCTGGC TGGGACCCGT GTGCGGGTCA GCAACATCGA GCCCGGGCTG
TGTTCCGGGA CCGATTTTTC GGTGGTGCGC CTGAACGGTG ACCTGAATGC AGTGGATGCG
CTGTACCGTG ATGTGCAGGC GATTCTGCCC GAGGACATTG CCGCTACGGT TGCGTGGATC
GCAGAACAGC CGCCACACGT AAATATCAAC ACGCTCGAAA TCATGCCGGT GGCGCAGAGC
AGCGCGGCCT TGAATGTGGC GCGCAATCTG CCGCCTTGCT GA
 
Protein sequence
MKTAFVTGAS SGFGRAICRT LVAKGYRVIG GARRMDKLQA LEHELGDNFI PLALDVTDGQ 
SISAAVSQIN EAAPAIDVLV NNAGLALGIE RAQACSAENW QRMIDTNITG LAMVTHAVLP
QMVQADSGMI INIGSIAGTY PYPGGNVYGA SKAFVRQFSL NLRADLAGTR VRVSNIEPGL
CSGTDFSVVR LNGDLNAVDA LYRDVQAILP EDIAATVAWI AEQPPHVNIN TLEIMPVAQS
SAALNVARNL PPC