Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_0542 |
Symbol | |
ID | 6109450 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 600641 |
End bp | 601402 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641620298 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001747416 |
Protein GI | 170719728 |
COG category | [R] General function prediction only |
COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0795693 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACTG CATTCGTGAC CGGCGCCTCC TCAGGCTTTG GCCGGGCCAT ATGCCGCACC CTGGTTGCCA AGGGCTATCG CGTGATCGGT GGCGCCCGCC GTATGGACAA GCTGCAGGCA CTGGAGCATG AACTTGGCGA CAACTTCATT CCACTGGCGC TGGATGTGAC CGATGGGCAG TCGATCAGCG CAGCGGTTTC GCAGATCAAC GAAGCTGCGC CGGCCATCGA TGTGCTGGTC AACAACGCAG GGTTGGCGCT GGGTATCGAG CGGGCCCAGG CCTGCAGCGC CGAGAACTGG CAGCGCATGA TCGACACCAA CATCACCGGC CTGGCCATGG TCACCCATGC GGTATTGCCG CAGATGGTCC AGGCCGACAG CGGCATGATC ATCAACATTG GTTCGATTGC CGGCACTTAT CCCTACCCGG GGGGCAACGT TTATGGCGCG AGCAAGGCGT TCGTGCGTCA GTTCAGCCTG AACCTGCGCG CCGATCTGGC TGGGACCCGT GTGCGGGTCA GCAACATCGA GCCCGGGCTG TGTTCCGGGA CCGATTTTTC GGTGGTGCGC CTGAACGGTG ACCTGAATGC AGTGGATGCG CTGTACCGTG ATGTGCAGGC GATTCTGCCC GAGGACATTG CCGCTACGGT TGCGTGGATC GCAGAACAGC CGCCACACGT AAATATCAAC ACGCTCGAAA TCATGCCGGT GGCGCAGAGC AGCGCGGCCT TGAATGTGGC GCGCAATCTG CCGCCTTGCT GA
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Protein sequence | MKTAFVTGAS SGFGRAICRT LVAKGYRVIG GARRMDKLQA LEHELGDNFI PLALDVTDGQ SISAAVSQIN EAAPAIDVLV NNAGLALGIE RAQACSAENW QRMIDTNITG LAMVTHAVLP QMVQADSGMI INIGSIAGTY PYPGGNVYGA SKAFVRQFSL NLRADLAGTR VRVSNIEPGL CSGTDFSVVR LNGDLNAVDA LYRDVQAILP EDIAATVAWI AEQPPHVNIN TLEIMPVAQS SAALNVARNL PPC
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