| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0521 |
|---|
| Symbol | putA |
|---|
| ID | 6109429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 572969 |
|---|
| End bp | 576922 |
|---|
| Gene Length | 3954 bp |
|---|
| Protein Length | 1317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641620277 |
|---|
| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_001747395 |
|---|
| Protein GI | 170719707 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0520721 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA CCACCCTTGG GGTCAAACTC GATGACCCTA CCCGTGAGCG ACTCAAGGCA
GCTGCGCAGT CCATCGACCG CACGCCGCAC TGGTTGATCA AGCAAGCAAT CTTCAATTAC
CTGGAGAAGC TCGAGGGTGG CGCCACCCTG ACCGAACTCA ACGGTCAGGC CAACAGCCCG
GCCGATGATG CCGGTGAAGT ACAGCCCGAC CATGCGCACC AGTGCTTCCT GGAGTTCGCT
GAGAGCATCC TGCCCCAGTC GGTGCTGCGC TCGGCCATTA CAGCCGCCTA TCGCCGCCCC
GAGCAGGAAG TGGTGCCGAT GCTGCTGGAA CAGGCGCGCC TGAGCGCACC CCTGGCCGAG
GCGACCAACA AGATGGCCGC CGGCATCGCC GAGAAGCTGC GCAACCAGAA GAGCGCCGGT
GGCCGCGCCG GCATCGTCCA GGGCCTGCTG CAGGAGTTCT CGCTGTCGTC CCAGGAAGGC
GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGTATTC CCGACAAAGG CACCCGTGAC
GCGCTGATCC GCGACAAGAT CAGCAGCGGC AACTGGCACC CGCACTTGGG CAACAGCCCG
TCGCTGTTCG TCAACGCGGC CACCTGGGGC CTGTTGCTGA CCGGTAAACT GGTTTCCACC
CACAACGAAG CCGGCCTCAC CACCTCGCTC ACCCGCATCA TCGGCAAGAG CGGCGAACCG
ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GCGAACAGTT TGTCACCGGC
GAGACCATCG CCGAAGCACT GGCCAACGCC AGCCGCTTCG AGTCCAAGGG CTTCCGCTAC
TCCTACGACA TGCTCGGCGA AGCCGCGCTG ACCGAGCACG ATGCGCAGAA ATACCTGGCG
TCCTATGAGC AGGCGATCCA CTCGATCGGC AAGGCCTCCC ACGGCCGCGG CATCTATGAA
GGCCCGGGCA TCTCGATCAA GCTCTCGGCA CTGCACCCAC GCTACAGCCG CGCTCAATAC
GAGCGGGTGA TGGAAGAGTT GTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAGCAG
TATGACATCG GCCTGAACAT CGACGCTGAA GAGGCCGACC GCCTGGAGCT GTCGCTCGAC
CTGCTCGAGC GCCTGTGCTT CGAGCCATCA CTGGCCGGCT GGAACGGCAT CGGCTTTGTC
ATCCAGGCTT ACCAGAAGCG CTGCCCATAT GTGATCGACT ACGTCATCGA CCTGGCCAAA
CGCAGCCGTC ACCGCCTGAT GATCCGCCTG GTGAAAGGCG CCTACTGGGA CAGCGAAATC
AAGCGCGCTC AGGTTGAGGG TCTGGAAGGC TACCCGGTCT ACACCCGCAA GGTGTACACC
GACGTTTCCT ACGTCGCTTG CGCCCGCAAG TTGCTGGCGG TACCGGAAGC CATCTACCCG
CAGTTCGCCA CCCACAACGC CCACACCCTG TCGGCCATCT ACCACATCGC CGGCCAGAAC
TATTACCCGG GGCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAACC GCTGTACGAG
CAGGTTGTAG GCAAAGTCTC GGAAGGCAAG CTTAACCGCC CGTGCCGCGT CTACGCGCCG
GTCGGCACCC ACGAAACCCT GCTGGCCTAC CTGGTGCGCC GCCTGCTGGA AAACGGCGCG
AACACCTCGT TCGTCAACCG TATCGCCGAC CACTCGATCT CCATCCAGGA ACTGGTCGCC
GACCCGGTCG CCAGTATCGA GCGCATGGCC ACCCAGGAAG GCAGCATCGG CCTGCCGCAC
CCGCGCATCC CGTTACCGCG TGACCTGTAT GGCAGTGAGC GGGCCAACTC GGCCGGTATC
GACATGGCCA ACGAACACCG CCTGGCGTCG TTGTCCTGCG CCATGCTGGC CACAGCCCAC
AATGACTGGA AAGCCACCCC ATTGCTGGCC TGCGCCGCCA GCGAAAGCGC TGCCACAGCG
GTACTGAACC CGGCAGATCA TCGCGACGTG GTCGGCCACG TGCAGGAAGC CACCGTTGCC
GACGTCGACA ACGCCATCCA GTGCGCGCTC AATGCCGCAC CGATCTGGCA GGCCACTCCA
CCCGCTGAGC GCGCAGCGAT CCTGGAGCGC ACCGCTGACC TGATGGAAGC CGAGATCCAG
CCGCTGATGG GCCTGCTCAT CCGCGAGGCC GGCAAAACCT TCGCCAACGC CATTGCCGAA
GTGCGCGAGG CCGTTGACTT CCTGCGCTAC TACGCCGTGC AGGCGCGCAA CGATTTCAGC
AATGACGCCC ACCGCCCATT GGGCCCGGTG GTGTGCATCA GCCCGTGGAA CTTCCCGCTG
GCCATCTTCA CCGGCCAGGT AGCCGCAGCC TTGGCTGCCG GTAACCCTGT GCTGGCCAAA
CCCGCCGAAC AGACCCCGAT GATCGCAGCC CAGGCTGTGC GCCTGCTGCT CGAAGCCGGC
ATTCCGGAAG GCGTGCTGCA ACTGCTGCCA GGGCGCGGCG AAACCGTTGG TGCCGGCCTG
GTCGGCGACG AACGCGTCAA GGGCGTGATG TTCACCGGTT CCACCGAAGT GGCGCGCCTG
CTGCAACGCA ACGTCGCCGG GCGCCTGGAC AACCAGGGCC GTCCGATCCC GCTGATCGCC
GAAACCGGTG GCCAGAACGC GATGATCGTC GATTCCTCGG CGCTGACCGA GCAGGTGGTG
ATCGACGTGG TGTCCTCGGC CTTCGACAGT GCTGGCCAGC GCTGCTCGGC CCTGCGCGTG
CTGTGCCTGC AGGAAGACTC GGCTGACCGC GTGATCGAGA TGCTCAAAGG TGCCATGGCC
GAAAGTCGCC TGGGCAACCC TGACCGCCTG GCCGTGGACA TTGGCCCGGT AATCGATGCC
GAAGCCAAGG CCGGTATCGA GAAGCACATC CAGGGCATGC GCGAAAAAGG CCGCCCTGTT
TATCAGGTCG CCATCGCCGA TGCTGCTGAA ACCAAGCGTG GCACCTTCGT GATGCCGACC
CTGATCGAGC TGGAGAGCTT CGATGAGCTC AAGCGCGAGA TCTTCGGCCC GGTACTGCAC
GTGGTGCGTT ACAACCGCCG CAACCTCGAC CAGTTGATCG AGCAGATCAA CAACTCCGGC
TATGGCCTGA CCCTCGGCGT GCATACCCGC ATCGACGAGA CCATCGCCAA GGTGGTGGAG
AACGCCAACG CCGGCAACAT GTACGTCAAC CGCAACATCG TTGGTGCGGT GGTGGGCGTG
CAGCCGTTCG GTGGTGAAGG CCTGTCCGGT ACCGGCCCGA AAGCGGGTGG CCCGCTGTAC
CTGTACCGCC TGCTGTCGAC CCGCCCGGCA GACGCCATTG GCCGTCACTT CCAGCAGCAG
GATGGCGAAG GCAAACCGGA CCGCACCCTG CACGAACAGC TGGTCAAGCC GCTGCACGGC
CTGAAGGCCT GGGCCCAGAG CAACCAGCTG GCCGACTTGG CTGCGCTGTG CGACCAGTTC
GCCAGCCAGT CGCAGAGCGG CATCGCCCGC CTGCTGCCAG GCCCGACCGG CGAGCGCAAC
AGCTACACCA TCCTGCCACG CGAGCACGTG CTGTGCCTGG CCGACAACGA GGCTGACCTG
CTGGCGCAGT TGGCCGCAGT ACTGGCCGTC GGCAGCTCGG CGGTGTGGGC AGACAGCGAG
CCTGGCAAAG CCCTGCGTGC CCGCCTGCCG CGTGAGCTGC AGGCCAAGGT CAAGCTGGTG
GCGGACTGGA ACAAGGATGA AGTGGCGTTC GACGCCGTGA TTCACCATGG CGATTCGGAC
CAGCTGCGCA GCGTGTGCCA GCAGGTGGCC AAGCGTGCTG GTGCGATCGT CGGTGTGCAC
GGGCTGTCCA GCGGGGATCA CCAGATTGCG CTGGAGCGGC TGGTGATTGA GCGGGCGGTG
AGTGTGAACA CCGCGGCGGC GGGGGGGAAT GCCAGCTTGA TGACCATTGG CTGA
|
|---|
| Protein sequence | MATTTLGVKL DDPTRERLKA AAQSIDRTPH WLIKQAIFNY LEKLEGGATL TELNGQANSP
ADDAGEVQPD HAHQCFLEFA ESILPQSVLR SAITAAYRRP EQEVVPMLLE QARLSAPLAE
ATNKMAAGIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD
ALIRDKISSG NWHPHLGNSP SLFVNAATWG LLLTGKLVST HNEAGLTTSL TRIIGKSGEP
MIRKGVDMAM RLMGEQFVTG ETIAEALANA SRFESKGFRY SYDMLGEAAL TEHDAQKYLA
SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMEELYPR LLSLTLLAKQ
YDIGLNIDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK
RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYVACARK LLAVPEAIYP
QFATHNAHTL SAIYHIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKVSEGK LNRPCRVYAP
VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVASIERMA TQEGSIGLPH
PRIPLPRDLY GSERANSAGI DMANEHRLAS LSCAMLATAH NDWKATPLLA CAASESAATA
VLNPADHRDV VGHVQEATVA DVDNAIQCAL NAAPIWQATP PAERAAILER TADLMEAEIQ
PLMGLLIREA GKTFANAIAE VREAVDFLRY YAVQARNDFS NDAHRPLGPV VCISPWNFPL
AIFTGQVAAA LAAGNPVLAK PAEQTPMIAA QAVRLLLEAG IPEGVLQLLP GRGETVGAGL
VGDERVKGVM FTGSTEVARL LQRNVAGRLD NQGRPIPLIA ETGGQNAMIV DSSALTEQVV
IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGNPDRL AVDIGPVIDA
EAKAGIEKHI QGMREKGRPV YQVAIADAAE TKRGTFVMPT LIELESFDEL KREIFGPVLH
VVRYNRRNLD QLIEQINNSG YGLTLGVHTR IDETIAKVVE NANAGNMYVN RNIVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPA DAIGRHFQQQ DGEGKPDRTL HEQLVKPLHG
LKAWAQSNQL ADLAALCDQF ASQSQSGIAR LLPGPTGERN SYTILPREHV LCLADNEADL
LAQLAAVLAV GSSAVWADSE PGKALRARLP RELQAKVKLV ADWNKDEVAF DAVIHHGDSD
QLRSVCQQVA KRAGAIVGVH GLSSGDHQIA LERLVIERAV SVNTAAAGGN ASLMTIG
|
|---|
| |