| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0501 |
|---|
| Symbol | |
|---|
| ID | 6109409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 548607 |
|---|
| End bp | 550604 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641620257 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001747375 |
|---|
| Protein GI | 170719687 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGCC GTCGTGAACG TGCCAACGCC ATTCGTGCAC TCAGCATGGA TGCCGTGCAA
AAGGCCAACA GCGGCCACCC AGGTGCCCCC ATGGGCATGG CGGATATCGC CGAAGTGCTT
TGGCGCGACT ATCTGAAGCA CAACCCGAGC AACCCGAGCT TCGCCGACCG TGACCGCTTC
GTGCTGTCCA ACGGCCACGG CTCGATGCTG ATCTACTCGC TGCTGCACCT GACCGGCTAC
GACGTCACCA TCGACGACCT CAAGTCGTTC CGCCAGTTGC ATAGCCGTAC CCCGGGCCAC
CCCGAGTTCG GCTACACCCC AGGTGTGGAA ACCACCACCG GCCCGCTGGG CCAAGGTTTG
GCCAACGCCG TGGGCTTTGC TTTGGCTGAG AAAGTGCTGG GTGCCCAGTT CAACCGCGAA
GGCCACAATA TCGTCGACCA CAACACTTAC GTGTTCCTCG GCGACGGCTG CATGATGGAA
GGTATCTCCC ACGAAGTCGC CTCGCTGGCC GGCACCCTGG GCCTGAACAA GCTGGTTGCC
TTCTATGACG ACAACGGCAT CTCCATCGAC GGTGAAGTGG AAGGCTGGTT CACCGACGAC
ACGCCCAAGC GTTTCGAGGC CTACAACTGG CTGGTGATCC GCAACGTCAA CGGCCACGAC
GCCGACGAGA TCCGCACGGC CATCGAGACT GCGCGCAAGA GCGACCGTCC GACCCTGATC
TGCTGCAAGA CCATCATCGG TTTCGGCTCG CCCAACAAGC AGGGCAAGGA AGACTGCCAC
GGTGCTCCAC TGGGCAACGA CGAAATCGCC CTGGCCCGCA AGGAGCTGAA CTGGAACCAC
GCTCCGTTCG AAGTTCCTGC CGACATCTAC GCCGAATGGA ATGCCAAAGA AGCAGGCGCC
AAGGCTGAAG CCGAGTGGAA CACGCGTTTC GAGGCCTATG CCGCCGCCTT CCCGGAACTG
GCCAGCGAGC TCAAGCGCCG TCTGAGCGGT GACCTGCCGG CCGACTTCTC GGAAAAAGCC
GCTGCCTACA TCGCTGAAGT CGCTGCCAAG GGCGAGACCA TCGCCAGCCG CAAGGCCAGC
CAGAACACCC TGAACGCCTT CGGCCCACTG CTGCCGGAAT TCCTTGGCGG CTCGGCCGAC
CTGGCCGGCT CCAACCTGAC CCTGTGGAAG GGTTGCAAGG GTGTGGACGC CAACGACGCC
AGCGGCAACT ACGTGTTCTA CGGCGTGCGC GAGTTCGGCA TGACCGCGAT CATGAACGGC
GTCGCCCTGC ACGGCGGCCT GGTGCCTTAC GGCGCGACGT TCCTGATGTT CATGGAATAC
GCCCGTAACG CCGTGCGCAT GTCCGCCCTT ATGAAGCAGC GCGTCATCCA TGTGTACACC
CACGACTCCA TCGGCCTGGG CGAAGACGGC CCGACCCACC AGCCGATCGA GCAACTGACC
AGCCTGCGCA GCACGCCGAA CCTGGACACC TGGCGCCCGG CCGACGCAGT CGAGTCGGCT
GTGTCCTGGA AGCACGCCCT GGAGCGCAAG GACGGCCCTT CGGCGCTGAT CTTCTCGCGT
CAGAACCTGC AGCATCAGGA CCGCGACGCC CAGCAGATCG CCGATATCGC CCGCGGCGGT
TACGTGCTCA AGGACTGTGC CGGCGAGCCT GAGTTGATCC TGATCGCCAC CGGCTCGGAA
GTGGGCCTGG CCGTTCAGGC GTTCGACAAG CTGACCGAGC AGGGCCGCAA GGTGCGTGTC
GTGTCGATGC CGAGCACCAG CGTGTTTGAC GCCCAGGATG CGGCCTACAA GCAGTCCGTA
CTGCCGCTGC AAGTGGGTGC CCGCATCGCC ATCGAAGCGG CTCATGCCGA CTTCTGGTAC
AAGTACGTGG GTCTCGAAGG CCGTGTCATC GGCATGACCA CTTACGGTGA ATCGGCTCCG
GCCAGTGCAC TGTTCGAGGA GTTCGGCTTC ACCCTGGAGA ACATCCTGGG TACTGCCGAA
GAGCTGCTGG AAGACTGA
|
|---|
| Protein sequence | MPSRRERANA IRALSMDAVQ KANSGHPGAP MGMADIAEVL WRDYLKHNPS NPSFADRDRF
VLSNGHGSML IYSLLHLTGY DVTIDDLKSF RQLHSRTPGH PEFGYTPGVE TTTGPLGQGL
ANAVGFALAE KVLGAQFNRE GHNIVDHNTY VFLGDGCMME GISHEVASLA GTLGLNKLVA
FYDDNGISID GEVEGWFTDD TPKRFEAYNW LVIRNVNGHD ADEIRTAIET ARKSDRPTLI
CCKTIIGFGS PNKQGKEDCH GAPLGNDEIA LARKELNWNH APFEVPADIY AEWNAKEAGA
KAEAEWNTRF EAYAAAFPEL ASELKRRLSG DLPADFSEKA AAYIAEVAAK GETIASRKAS
QNTLNAFGPL LPEFLGGSAD LAGSNLTLWK GCKGVDANDA SGNYVFYGVR EFGMTAIMNG
VALHGGLVPY GATFLMFMEY ARNAVRMSAL MKQRVIHVYT HDSIGLGEDG PTHQPIEQLT
SLRSTPNLDT WRPADAVESA VSWKHALERK DGPSALIFSR QNLQHQDRDA QQIADIARGG
YVLKDCAGEP ELILIATGSE VGLAVQAFDK LTEQGRKVRV VSMPSTSVFD AQDAAYKQSV
LPLQVGARIA IEAAHADFWY KYVGLEGRVI GMTTYGESAP ASALFEEFGF TLENILGTAE
ELLED
|
|---|
| |