| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0498 |
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| Symbol | ligB |
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| ID | 6109406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 544308 |
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| End bp | 546011 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641620254 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001747372 |
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| Protein GI | 170719684 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.436093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTTT TCCTGCGCCT CGCAGCCCTG TTGCTGCTCC ACACGTCCAT CGCCCAAGCC
AGTCACTGTC CGGACTGGAG TACCAAGCAA GCCAGAACCG AAGTTGCCCA ACTTCGCGCA
ACCCTGGCCA ACTGGGACGA CCATTACCAC CGCCAGGGTA TAGCGCTCGT AGCCGATGAA
CTCTACGACC AGGCCCGACA CCACCTGCTG CACCTGCAAC AATGCTTTGG TCAGGAATTC
ACAGATCCAA GCCCACTGGC CAGCGCACGC GGCCCTATTG CCCACCCCGT TGCCCACACC
GGCGTCGAGA AACTCCATGA CGCAGCTGCC GTTGCACGCT GGATGACCGG CAAGAAGGGC
GTATGGGTGC AGCCGAAGGT CGACGGAGTG GCAGTCTCAC TGGTCTATCG CCAAGGCCGG
CTGGTACAGC TGCTCAGCCG TGGTGATGGC CTCCAGGGGC ATGACTGGAG CCGCCACATC
AAGGACCTCG ACAGCATCAC TAGGCAATTG CCTCAACCAC TGGACGTCGT ATTGCAAGGC
GAGTTGTACC TGCGCCTGCA AGCGCACGTG CAAGCTGAGG CAGGCAGCAG CAATGTGCGC
GGCACCGTGG CCGGGATGCT GGCACGCAAG CAGCTTGGCC CTGAACCGGG CGCGAGCATC
GGCCTGTTCG TCTGGGACTG GCCGCACGGG CCGGACAACC AGGGCGAGCG CCTCACACAA
CTTGCAGCCT GGGGGTTCCC CGACAGTCAG CGTTTCAGCA CAGCTATCGA CACCCCCGAA
GAGGCTACCC ACTGGCGCCT GCACTGGTAC CGCTCACCGC TGCCCTTCGC CACCGATGGC
GTGATTCTGC GCCAGGACAG CCGCCCCCCG GCCGACCGCT GGCAGCCCAA CGCCCCCTAT
TGGATCGCCG CGTGGAAATA CCCCTTCGCC CAAGCGCTGG CAGAGGTACG GGAGGTACGC
TTTCTAATCG GCCGCACAGG CAAAGTCACG CCGTTGCTCA GGCTCAAACC GGTCACCCTG
GATGATCGCC GGATCAGCCA GGTCAGCCTC GGGTCCCTGG CCCGCTGGCG GGCGCTCGAC
ATTCGCCCGG GCGATCAAGT TGCGATCAGC CTTGCCGGCC TGACCATTCC ACGCTTCGAC
CAAGTGGTCC ACCGCGCCGT CGAGCGTCAG GTATTACCTG TACCCGAAGC TGAACAGTAC
GGCCAACACA GTTGCTGGCA AGCCAGCGAC GGCTGCCAAG AGCAGTTTAT CGCGCGCCTC
GTCTGGCTCA GTGGCAAGCA GGGCCTGGCC ATGCCAGGCA CCGGCAAGGG CACCTGGAAG
CGGCTGGTTC AGGCAGGGCT GGTGACATCG CTGACGGATT GGTTGACGCT CGATGCCCAA
CAGCTGTTAT CGGTACCGGG CATCAGCAGG AAAACCGCCA CACAGCTACA ACGCAGTTTC
GACATAGGCC GCAACAGACC TTTCGCTCAG TGGCGCAAAG GGTTGGGCGT ACCGGCGCCA
GCTCAGGTGC CACGGGACGA GAACTGGCAA ACGCTGGCCG GCCGGTCTGC CAGCGATTGG
CAAACCTTGC CCGGCATTGG CGCAACACGC GCCACTCAAC TCGCGAACTT TTTCACCCAT
GAGCAAGTAC AACGGATAGC CACGCTGCTG GGAACCCGTG GGATCGATGG TTTTCACGGG
ACAGACGACG TTGGTTCGCA ATAG
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| Protein sequence | MSFFLRLAAL LLLHTSIAQA SHCPDWSTKQ ARTEVAQLRA TLANWDDHYH RQGIALVADE
LYDQARHHLL HLQQCFGQEF TDPSPLASAR GPIAHPVAHT GVEKLHDAAA VARWMTGKKG
VWVQPKVDGV AVSLVYRQGR LVQLLSRGDG LQGHDWSRHI KDLDSITRQL PQPLDVVLQG
ELYLRLQAHV QAEAGSSNVR GTVAGMLARK QLGPEPGASI GLFVWDWPHG PDNQGERLTQ
LAAWGFPDSQ RFSTAIDTPE EATHWRLHWY RSPLPFATDG VILRQDSRPP ADRWQPNAPY
WIAAWKYPFA QALAEVREVR FLIGRTGKVT PLLRLKPVTL DDRRISQVSL GSLARWRALD
IRPGDQVAIS LAGLTIPRFD QVVHRAVERQ VLPVPEAEQY GQHSCWQASD GCQEQFIARL
VWLSGKQGLA MPGTGKGTWK RLVQAGLVTS LTDWLTLDAQ QLLSVPGISR KTATQLQRSF
DIGRNRPFAQ WRKGLGVPAP AQVPRDENWQ TLAGRSASDW QTLPGIGATR ATQLANFFTH
EQVQRIATLL GTRGIDGFHG TDDVGSQ
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