Gene PputW619_0479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputW619_0479 
Symbol 
ID6109387 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida W619 
KingdomBacteria 
Replicon accessionNC_010501 
Strand
Start bp525199 
End bp525918 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content65% 
IMG OID641620235 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001747353 
Protein GI170719665 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TCGGCGAGCA CGACCTGCCC 
GAAGCCCAGG CCCATTACAT CGGCCGCGTG CTGCGCATGG CCCCCGGCGA TGCCGTGCAA
TTGTTCGATG GCAGCGGCCA GGAATACCTG GGCCAATTGC TCGAAGTGGG CAAGAAGACC
GTGCGCGTCA GCCTCGACCA GGCCGTTGCA GGCCAGGCCG AGTCGCCATT GCACATTCAT
CTCGGCCAAG GCCTTTCCCG CGGCGAGCGC ATGGACTGGG CCATCCAGAA GGCCACCGAA
CTGGGCGCCA ATGAAATCAC CCCGATCGTC AGCGAGCGCT GCGAAGTGCG CCTCAAAGAC
GAGCGCGCCG ACAAGCGCCT CGCCCATTGG CGCCAGGTCG CGATCAGCGC CTGCGAGCAA
TGCGGCCGCT CGATCTTGCC GATCATCCGC GCGCCAGTGA CCTTGGGTGA CTGGATCAAG
GGCAGCGATG CTGACCTGAA ACTGGTCTTG CACCCTGTCG CTGAGCCGCT GACCAGTCAT
GACAAACCGG CACGCCTGGC GTTTCTGATC GGACCCGAGG GAGGCTTGAG CGAAGCGGAA
GTCGACCAGG CCAAGGGGGC AGGCTTCCAA GCTGCCCGTC TTGGCCCGCG GGTCCTGCGC
ACTGAAACAG CGCCGGTGGT GGCCCTGTCG GTGGCGCAAC AGCTGTGGGG CGATTTTTAA
 
Protein sequence
MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYL GQLLEVGKKT 
VRVSLDQAVA GQAESPLHIH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD
ERADKRLAHW RQVAISACEQ CGRSILPIIR APVTLGDWIK GSDADLKLVL HPVAEPLTSH
DKPARLAFLI GPEGGLSEAE VDQAKGAGFQ AARLGPRVLR TETAPVVALS VAQQLWGDF