| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0401 |
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| Symbol | |
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| ID | 6109309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 429368 |
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| End bp | 431059 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641620158 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001747276 |
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| Protein GI | 170719588 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.726855 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATACG ATTACATCAT CGTTGGTGCC GGCTCGGCCG GTAACACCCT GGCCACTCGC
CTGACTGAAG ACGCCAGCGT CACCGTCCTG CTGCTCGAAG CCGGTGGCCC CGACTACCGC
TTCGACTTCC GCACCCAGAT GCCGGCCGCC CTGGCATTCC CGCTCCAAGG CCGTCGCTAC
AACTGGGCCT ACGAGACCGA CCCGGAGCCG CATATGGACG GCCGCCGCAT GGAATGTGGC
CGCGGCAAGG GCCTGGGTGG TTCCTCGCTG ATCAACGGCA TGTGCTACAT CCGCGGTAAC
GCCCTGGACT TCGACGGCTG GGCTAAGTTG CCGGGCCTGG AAGACTGGGC TTACCTGGAC
TGCCTGCCGT ACTTCCGCAA GGCGGAAACC CGTGACATCG GCCCCAACGA TTACCACGGT
GGCGAAGGCC CGCTCAGCGT TGCCACGCCC AAAGCTGGCA ACAACCCGCT GTTCAACGCC
ATGGTCGAGG CCGGCGTCCA GGCCGGTTAC CCGCGCACTG AAGACCTGAA CGGCTACCAG
CAGGAAGGCT TCGGTCCGAT GGACCGTTCG GTGACCAAGA ACGGCCGCCG CTCCAGCACC
GCCCGCGGTT ACCTGGACCA GGCCAAGAAG CGCCCGAACC TGACCATCGT CACCCATGCC
CTGAGCGACC GCGTGCTGTT CGAAGGCAAG CGCGCCGTTG GCGTGACCTA CCTGGTCGGC
GACAGTGAAG AGCGCGTCGA AGCCCGCGCC CGCAAGGAAG TCATCGTAAG CTCTGGCGCC
ATCGCCTCGC CGCAACTGCT GCAGCGCTCC GGCGTGGGCC CGCGCGCCCT ACTGGAGAGC
CTCGACATCC CGGTCGTGCA CGACCTGCCG GGCGTCGGCG AGAACCTGCA GGATCACCTC
GAGCTTTACC TGCAATACGC CTGCACCCAG CCGGTGTCGC TGTACCCGTC GCTGCTGTGG
TGGAACCAGC CGGCCATCGG TGCCGAGTGG CTTTTCAACG GCACCGGTAT CGGCGCCAGC
AACCAGTTCG AGGCAGGCGG TTTCATCCGT ACCCGCCCTG AGTTCGAATG GCCGAACATT
CAGTACCACT TCCTGCCTGT CGCGATTAAC TACAACGGTT CCAACGGCGT GAAGGAACAC
GGTTTCCAGG CACATATGGG CTCGATGCGT TCGCCTAGCC GTGGCCGCAT CCAGGTCAAG
TCCAAGGACC CTCGCCAGCA CCCGAGCATC CTGTTCAACT ACATGGCCAC CGAGCAGGAC
TGGCAGGAGT TCCGTGACGG TATCCGCCTG ACTCGCGAGA TCATGGCCCA GCCAGCGCTG
GACCCGTACC GTGGCCGCGA AATCAGCCCG GGCGCGCACG TCCAGACGGA CGAAGAGCTG
GACAAGTTCA TCCGCGAGCA CGCCGAAACC GCCTTCCACC CGTCCTGCTC GTGCAAGATG
GGTACCGACG ACATGGCGGT GGTCGATGGC GAAGGCCGCG TGCACGGCAT GCAGGGCCTG
CGTGTAGTGG ATGCGTCGAT CATGCCGATC ATCATCACCG GCAACCTCAA CGCCACCACG
ATCATGATCG CCGAGAAAAT TTCGGACAAG ATCCGCAACC GCAAGCCGCT GCCTCGCAGC
ACTGCCAAGT ACTACGTGGC CAACGGCGCC CCGGTAAAAG GCAAGCCAAT GCGTGAAGTG
AAGCAGGCCT GA
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| Protein sequence | MEYDYIIVGA GSAGNTLATR LTEDASVTVL LLEAGGPDYR FDFRTQMPAA LAFPLQGRRY
NWAYETDPEP HMDGRRMECG RGKGLGGSSL INGMCYIRGN ALDFDGWAKL PGLEDWAYLD
CLPYFRKAET RDIGPNDYHG GEGPLSVATP KAGNNPLFNA MVEAGVQAGY PRTEDLNGYQ
QEGFGPMDRS VTKNGRRSST ARGYLDQAKK RPNLTIVTHA LSDRVLFEGK RAVGVTYLVG
DSEERVEARA RKEVIVSSGA IASPQLLQRS GVGPRALLES LDIPVVHDLP GVGENLQDHL
ELYLQYACTQ PVSLYPSLLW WNQPAIGAEW LFNGTGIGAS NQFEAGGFIR TRPEFEWPNI
QYHFLPVAIN YNGSNGVKEH GFQAHMGSMR SPSRGRIQVK SKDPRQHPSI LFNYMATEQD
WQEFRDGIRL TREIMAQPAL DPYRGREISP GAHVQTDEEL DKFIREHAET AFHPSCSCKM
GTDDMAVVDG EGRVHGMQGL RVVDASIMPI IITGNLNATT IMIAEKISDK IRNRKPLPRS
TAKYYVANGA PVKGKPMREV KQA
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