| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0244 |
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| Symbol | dapF |
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| ID | 6109023 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 257913 |
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| End bp | 258743 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641620000 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001747119 |
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| Protein GI | 170719431 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0867905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.652879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCTGC GTTTTACCAA GATGCATGGG CTGGGCAATG ACTTCATGGT CCTGGACCTG
GTCAGCCAGC ACGCACACAT CCAGCCCAAG CACGCCAAGC AATGGGGCGA CCGCCACACC
GGTATCGGTT TCGACCAGTT GCTTATCGTC GAGGCACCGA ACAACCCGGA AGTGGATTTC
CGCTACCGGA TCTTCAATGC CGACGGTTCG GAAGTGGAGC AATGCGGCAA CGGTGCGCGC
TGCTTCGCAC GATTCGTGCT GGACAAACGC TTGACCGCGA AAAAGCGCAT CCGTGTTGAA
ACCAAGGGCG GCATCATCGA GCTGGACGTG CAGAACGACG GCCAGGTGTG TGTCGACATG
GGGCCACCGC GCTTCATTCC CGCCGAAATC CCATTCGTCG CTGATGAGCA GGCGCTCAAT
TACCCGCTGG AAGTCGACGG CGAGTTGCAC TCTATTGCTG CCGTATCCAT GGGTAATCCG
CATGCCGTGC TGCGCGTCGA TGACATACGT ACTGCGCCGG TCCATGGCCT GGGCCCGAAA
ATCGAGAACC ACCCACGCTT CCCGCAGCGG GTGAACGCCG GTTTCCTCCA GGTCATTGAC
CGCCACCGCG CCAACCTGCG GGTATGGGAA CGTGGCGCCG GCGAGACCCA GGCCTGCGGC
ACCGGTGCCT GTGCAGCAGC CGTGGCCGCC ATCAGCCAGG GCTGGATGGA CTCTCCGGTG
TCCCTGGACC TGCCTGGTGG GCGCCTGAAC ATCGAGTGGG CCGGCCCCGG CACGTCCGTG
TTGATGACTG GCCCAGCCGT ACGCGTCTAC GAAGGACAGG TTCGTCTCTA A
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| Protein sequence | MLLRFTKMHG LGNDFMVLDL VSQHAHIQPK HAKQWGDRHT GIGFDQLLIV EAPNNPEVDF
RYRIFNADGS EVEQCGNGAR CFARFVLDKR LTAKKRIRVE TKGGIIELDV QNDGQVCVDM
GPPRFIPAEI PFVADEQALN YPLEVDGELH SIAAVSMGNP HAVLRVDDIR TAPVHGLGPK
IENHPRFPQR VNAGFLQVID RHRANLRVWE RGAGETQACG TGACAAAVAA ISQGWMDSPV
SLDLPGGRLN IEWAGPGTSV LMTGPAVRVY EGQVRL
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