| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0241 |
|---|
| Symbol | |
|---|
| ID | 6109020 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | - |
|---|
| Start bp | 255598 |
|---|
| End bp | 256293 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641619997 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001747116 |
|---|
| Protein GI | 170719428 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.155059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.796884 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA AGCTGATCAC GTTCGACCTT GACGACACCT TGTGGGACAC CGCGCCAGTG
ATTGCCAGCG CGGAAGTCGT GCTGCGCGAC TGGCTGCAGG CCAACGCTCC GATACTTGGC
GGCGTGCCGG TGGAACACCT GTTCGCCATT CGCGAACGTC TGGTGCAGGC TGAGCCAGGC
CTCAAGCACC GTATCAGCGC TTTGCGCCGG CGCGTGCTGT TCCATGCGCT GGAAGAGGTG
GGATACAGCG AAAAGCACGC TCAGGAGCTT GCCAACGAAG GGTTTGAGGT GTTCTTGCAT
GCCCGGCACC AGGTTGAGGT GTTCCCAGAA GTGCAGCCGG TGCTGGAAAT TCTGCGCCAC
CACTACACCC TGGGGGTGGT CACCAATGGC AATGCCGACG TACGCCGCCT GGGCCTGGCC
GATTACTTCC GCTTCGCCCT GTGCGCCGAG GACCTGGGGA TAGGCAAACC AGACCCGGCG
CCCTTCATCG AAGCGCTGAA GCGTGGCGAA GTAGAAGCCA GTGCCGCCGT GCATGTTGGC
GATCATCCCG GGGATGACAT TGGCGGCGCC CAGCGCGCAG GCTTGCGGGC GGTTTGGTTC
AACCCCCAGG GCAAGGCCTG GTTGGGGGAA GCGGCGCCGG ATGCCGAAAT CCAGCGCCTG
TCGCAGCTGC CCGACATACT TGCGCGCTGG CGCTGA
|
|---|
| Protein sequence | MSIKLITFDL DDTLWDTAPV IASAEVVLRD WLQANAPILG GVPVEHLFAI RERLVQAEPG
LKHRISALRR RVLFHALEEV GYSEKHAQEL ANEGFEVFLH ARHQVEVFPE VQPVLEILRH
HYTLGVVTNG NADVRRLGLA DYFRFALCAE DLGIGKPDPA PFIEALKRGE VEASAAVHVG
DHPGDDIGGA QRAGLRAVWF NPQGKAWLGE AAPDAEIQRL SQLPDILARW R
|
|---|
| |