| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0207 |
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| Symbol | |
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| ID | 6108986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 212579 |
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| End bp | 214243 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641619963 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001747082 |
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| Protein GI | 170719394 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0426224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC CTGTCGAACC TTTGCGTTTG CTGTTGTTGG CTGATGAGCC GGAATGGGCC
GCCTTGTTGC GCGAATGCCT GCTGCCGCTG AACGGTGCAG CGGTACTGCT GACTGCGCCC
AACTGGGCTG CAGTCGACAG CCTTTTCAGC CAAGACCGCC AGGCCGTCAT CCTGGCGACC
CAGGCCCTGC AACCCGCGCC GGGGCGCTGC GAGCTGCCAA CTATCCTGTT GCTTGACGAT
GAGCCGGTGG CCCCACCCAC AGGCGTCAGC GACTGGCTGG TGCGCAGCCA GCTCAATGCC
GATGCGCTTC GCCGTTCGTT GCGCCACGTG CGCGAACGTG GCGTGCTGGT GGCCACCTTG
CAGCGCCTGG CCGAGCAGGA CCCGCTGACC GGCATCGCCA ACCGCCAGGG TTTTCAGGCC
CTGCTGACGG CACGGCTGGC GGAGAACGAC GGGCGCGGGG TGGCCCTTGG GCACCTGGAC
CTGGACAACT TTCGTCACGT CAACGATGCT CTCGGCCACC AGGGTGGCGA CCGGCTGATC
CTGCAGGTGG TGTCACGCCT GAAGCAGCAA CTGGAGGCCG GCGACCAGCT GGCGCGCCTG
GGCAGTGATG AATTTGCCCT GCTGATCGAC ACCCGTCGCG ACACCGGCCG CGCCGAGCGC
ATCGCCGAAC GCATCGTCGA AGCCCTCGCC GAGCCTTATT GGATCGACGG CGAAAGCCTG
TTGCTTGGCT GCAGCCTGGG CCTGGCCCAC GCCCGCGCGC AAAGTGGCGC CGACCCATTG
ATGTGGCATG CGCACATCGC CATGCGCCAG GCCAAGAGCA GCCAGGGCTG TACCTTTCAT
GTGTTCAATG AGCGGATCAA CCGCAACGCC CGCAGCCTCG CCGACCTGGA AGGCGAACTG
CGCAGGGCCC TGCGCCGTGA TGAACTGGAG CTGCACTACC AGCCGCGACT GAACCTGGCC
GATGGCAGCA TCGTCGGCCT TGAGGCGCTG GTGCGCTGGC GTCATGCCGA GCGCGGCCTG
TTGCCGCCGA GCGAGTTCGT GCCGCTGGCC GAGCAGAGCG GGCTGATCGT ACCGTTGGGC
TACTGGGTTA TATCCCGTGC CCTGCGTGAC ATGCAGGCCT TGCGCGAGAG CGGCCTGGCA
CCACTGCACA TGGCGGTCAA CCTGAGCTTT CGCCAGTTCC AGGACAGCCA GCTGCTGGCC
ACCCTGAGCC GGCTGATCAT CGAGCATGGC GTCGATGCCC GCTGGCTGGA GTTCGAGCTG
ACCGAGACGG CGGTGATGCG CCGCAATGAG CTGGTCCGCC AGACCATGGA TGCCCTGGGG
CGCCTGGGCG TGCGCTTCTC GCTCGACGAC TTCGGAACCG GCTTCTCATC CTTCGTGCAC
CTGAACAGCC TGCCGATCAC CTTGCTGAAG GTCGATCGCA GCTTTGTCGC CGAAATGGAG
ATGCGCGAGG AAAACCGCAA GCTGGTGCAC GCGATGATCA ACCTGGCGCA CAACCTCAAC
CTCGAGGTGG TGGCCGAGGG CGTTGAGAGC CCTGAGCAGA TGGCCCTGCT ACGCGAGTTT
GGCTGTGACC AGGTGCAGGG GTTTCTGGTC AGCAAGCCAC TGCCGGTGGA TGAGCTGGTG
GAATATCTGT CGGGAAGCGT CCCGCCTCAG GTGGTGAGTC TTTGA
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| Protein sequence | MSTPVEPLRL LLLADEPEWA ALLRECLLPL NGAAVLLTAP NWAAVDSLFS QDRQAVILAT
QALQPAPGRC ELPTILLLDD EPVAPPTGVS DWLVRSQLNA DALRRSLRHV RERGVLVATL
QRLAEQDPLT GIANRQGFQA LLTARLAEND GRGVALGHLD LDNFRHVNDA LGHQGGDRLI
LQVVSRLKQQ LEAGDQLARL GSDEFALLID TRRDTGRAER IAERIVEALA EPYWIDGESL
LLGCSLGLAH ARAQSGADPL MWHAHIAMRQ AKSSQGCTFH VFNERINRNA RSLADLEGEL
RRALRRDELE LHYQPRLNLA DGSIVGLEAL VRWRHAERGL LPPSEFVPLA EQSGLIVPLG
YWVISRALRD MQALRESGLA PLHMAVNLSF RQFQDSQLLA TLSRLIIEHG VDARWLEFEL
TETAVMRRNE LVRQTMDALG RLGVRFSLDD FGTGFSSFVH LNSLPITLLK VDRSFVAEME
MREENRKLVH AMINLAHNLN LEVVAEGVES PEQMALLREF GCDQVQGFLV SKPLPVDELV
EYLSGSVPPQ VVSL
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