Gene PputW619_0186 details

Gene Information

• Locus tag: PputW619_0186
• Symbol: radC
• ID: 6108965
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas putida W619
• Kingdom: Bacteria
• Replicon accession: NC_010501
• Strand: +
• Start bp: 191084
• End bp: 191764
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 641619942
• Product: DNA repair protein RadC
• Protein accession: YP_001747061
• Protein GI: 170719373
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 0.953222
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.000000662884
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAGATAA GCGAGTGGCC AGCCGAGGAG CGGCCCAGGG AAAAGTTGAT GCAGCGAGGG 
GTGGGCAGCC TTTCTGATGC CGAATTGCTG GCTGTGTTTC TCGGCTCTGG CGTGCGCGGG 
CGCAACGTCG TGGAGCTGGC GCGAGGGCTG CTCGTCAAGT TCGGCGGCTT GCGCCAGTTG 
CTTGAAGCTG ACAGGGACGC ATTTGTGGGT GAGCTCGGGC TTGGGCCGGT GCGGTATGGT 
CAATTGCAGG CACTGCTGGA GATCGGGCGG CGCAACCTTG CCACCTCGAT CGAGCGCGAC 
TGCGCCCTGG AGAGCCCCTC TGCGGTGCGC AGATACCTGA AAGCCATGCT GCGTCATGAG 
CCTAGCGAAG TATTTGGCTG TCTGTTTCTG GATAGCAAAC ACCGGCCGTT GGCTTTCGAG 
ATCCTGTTCA GAGGGACGAT CGACAGGGCC AGCATCTATC CGCGGGAAGT GGTGCGCCGT 
TCGTTGATGC ATAACGCTGC GGCATTGATT CTCTGCCACA ACCATCCTTC GGGTAATAGT 
GAGCCGAGCC AGGACGATGT GCATATGACG CTTGCATTGA AGCGGGGGTT GGCGCTGATC 
GATGTGCGGG TGCTCGATCA CATTATCGTG GGTGATGGGG AGCCGCTGTC GATGGTGGAG 
CAGGGGTGGA TTGTCGCTTA G 

 

Protein sequence

MKISEWPAEE RPREKLMQRG VGSLSDAELL AVFLGSGVRG RNVVELARGL LVKFGGLRQL 
LEADRDAFVG ELGLGPVRYG QLQALLEIGR RNLATSIERD CALESPSAVR RYLKAMLRHE 
PSEVFGCLFL DSKHRPLAFE ILFRGTIDRA SIYPREVVRR SLMHNAAALI LCHNHPSGNS 
EPSQDDVHMT LALKRGLALI DVRVLDHIIV GDGEPLSMVE QGWIVA