| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_0179 |
|---|
| Symbol | rph |
|---|
| ID | 6108958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 184470 |
|---|
| End bp | 185192 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641619935 |
|---|
| Product | ribonuclease PH |
|---|
| Protein accession | YP_001747054 |
|---|
| Protein GI | 170719366 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR01966] ribonuclease PH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.308415 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00000767641 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTC CAAGTGGTCG CGCCGCCGAT CAGCTCCGCT CGATCCGCAT CACCCGCAAC
TACACCAAGC ACGCCGAAGG GTCGGTACTG GTCGAGTTCG GTGACACCAA GGTCATCTGC
ACGGTCAGCG TTGAAAACGG TGTGCCGCGC TTCCTCAAAG GCCAGGGCCA AGGCTGGCTG
ACCGCCGAGT ACGGCATGCT GCCGCGCTCC ACCGGTGAGC GTAACCAGCG TGAAGCCAGC
CGTGGCAAGC AGGGTGGTCG CACCCTGGAA ATCCAGCGCC TGATCGGCCG CTCGCTGCGC
GCCGCGCTGG ACATGAGCAA GCTGGGTGAC ATCACTTTGT ACGTCGACTG CGATGTGATC
CAGGCCGATG GCGGCACCCG CACCGCGTCG ATCACCGGCG CCATGGTCGC CTTGGTCGAT
GCCTTGGCAG TGATCAAGAA ACGTGGTGGC CTGAAGGCCG GCAATCCGCT CAAGCACATG
ATCGCCGCCG TGTCGGTGGG TATGTACCAG GGCGAAGCCG TACTCGACCT GGACTATCTG
GAAGACTCCG CTGCAGAGAC CGACCTGAAC GTGGTCATGA CCAGTGCCGG TGGTTTCATC
GAAGTGCAGG GCACTGCAGA GGGTGCACCG TTCCAGCCCG AAGACTTCAA CGCCATGCTG
GCGCTGGCGC AAAAGGGCAT GAACGAGATC TTCGAACTGC AGCAGGTCGC TCTGGCCGAC
TGA
|
|---|
| Protein sequence | MKRPSGRAAD QLRSIRITRN YTKHAEGSVL VEFGDTKVIC TVSVENGVPR FLKGQGQGWL
TAEYGMLPRS TGERNQREAS RGKQGGRTLE IQRLIGRSLR AALDMSKLGD ITLYVDCDVI
QADGGTRTAS ITGAMVALVD ALAVIKKRGG LKAGNPLKHM IAAVSVGMYQ GEAVLDLDYL
EDSAAETDLN VVMTSAGGFI EVQGTAEGAP FQPEDFNAML ALAQKGMNEI FELQQVALAD
|
|---|
| |