Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4881 |
Symbol | hgdC |
ID | 6144141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 4997027 |
End bp | 4997794 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 641619685 |
Product | (R)-2-hydroxyglutaryl-CoA dehydratase activator |
Protein accession | YP_001746792 |
Protein GI | 170681785 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1924] Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) |
TIGRFAM ID | [TIGR00241] CoA-substrate-specific enzyme activase, putative |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.705619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 0.786718 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCATATT CGATTGGCAT TGATTCCGGC TCAACCGCCA CCAAAGGGAT CTTACTGGCA GACGGCGTGA TTACGCGCCG TTTCCTCGTT CCAACACCCT TTCGCCCGGC AACAGCAATT ACTGAAGCCT GGGAAACTCT GCGCGAAGGG TTAGAAACAA CGCCGTTTCT GACGCTCACC GGCTACGGAC GGCAACTGGT GGATTTTGCC GATAAACAGG TGACGGAAAT CTCCTGTCAC GGGCTGGGCG CACGGTTTCT TGCGCCGGCA ACGCGCGCAG TAATCGACAT CGGTGGTCAG GACAGCAAAG TGATTCAGCT TGATGATGAC GGTAACCTGT GCGATTTCCT GATGAATGAC AAATGCGCGG CGGGCACCGG GCGTTTCCTG GAGGTGATCT CGCGCACGCT TGGCACCAGC GTCGAGCAAC TCGACAGCAT TACTGAAAAT GTCAGACCGC ACGCCATCAC GAGTATGTGC ACAGTGTTTG CCGAATCAGA AGTGATCAGC CTGCGCTCAG CGGGCGTCGC GCCAGAAGCG ATTCTCGCTG GAGTGATTAA CGCGATGGCG CGGCGGAGTG CCAATTTCAT TGCTCGTCTC TCCTGTGAAG CGCCGATTCT GTTTACTGGT GGCGTTAGTC ATTGCCAGAC GTTTGCCCGG ATGTTGGAAA CTCACCTGGG AATGCCGGTA AATACCCATC CTGATGCGCA ATTTGCTGGC GCAATTGGCG CAGCGGTAAT TGGTCAACGA GTGAGGACAC GCCGATGA
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Protein sequence | MAYSIGIDSG STATKGILLA DGVITRRFLV PTPFRPATAI TEAWETLREG LETTPFLTLT GYGRQLVDFA DKQVTEISCH GLGARFLAPA TRAVIDIGGQ DSKVIQLDDD GNLCDFLMND KCAAGTGRFL EVISRTLGTS VEQLDSITEN VRPHAITSMC TVFAESEVIS LRSAGVAPEA ILAGVINAMA RRSANFIARL SCEAPILFTG GVSHCQTFAR MLETHLGMPV NTHPDAQFAG AIGAAVIGQR VRTRR
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