| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4827 |
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| Symbol | |
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| ID | 6143576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4916328 |
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| End bp | 4922642 |
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| Gene Length | 6315 bp |
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| Protein Length | 2104 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641619630 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001746737 |
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| Protein GI | 170683318 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTTC AGCAACTGCA TTATGCGCCA CTTCTAAATC AGCTTCATCA GCGCGCGGTG
AGGTCGGTGG TAAGTCAGTT GGCATTGCGG AGCAAGTCGT TGACTCATTA TCTGGAATCA
CAATATTTCC AGCCTCCCGG TCAGGAGGGG TCACTGCTTG CAGACCCGGT ATTCGAAAGC
ACGTTCGGCT GGATGCCTGC GGATGAAACA ATGGAGGATT TGCGGGACAA GCTAATTTCC
AGCCCGCTGG TTGATGCATT GAGCAAAGCG CCGGTGCCAT TTCGTCATCA ACTTACGGCG
TGGCGAACGA TTCTGGAAGA CAAAAAATCC TTGTTAGTGA GCAGCGGTAC GGGATCCGGG
AAAACAGAAT GCTTTATGGT ACCGGTTCTG GAAGATCTTA TTCGTCAGCA AAAATCGACC
CGTCAGTCAC TAACAGGGAC ACAAGCTATT TTCTTGTATC CGTTAAATGC ATTAATTAAC
AGCCAACAGG AGCGGCTTCG CGAATGGACG CGCGGATTTA AGGGGAAAAT ACGCTTCGCG
CTATATAATG GCGAAACCCG GCATACCAAA TACGAAGTTC AGGAAGATCA GTTGAAAGTA
CCTGAACAAG CTTTGAGTCG GGAAGCCATT TACGAAGCAC CACCTTCCAT CATGGTGACG
AATACCACCA TGCTGGAATA TATGCTGATT CGTCGTAAAG ATGCCCCAAT CATCGAAAAG
TCTCAGGGGA TGTTAAAGTA TATCGTCCTG GATGAAGCCC ATAGTTATAT TGGTTCTCAG
GCTGCTGAGT TAGCGCTGCT TTTACGTCGT GTTATGCAGG CTTTCAATGT TGGACCGGGC
ACAGATAAAC CTGTGCAGAT TATCGCGACC TCTGCCACTA TTGGTGAAGA CTCTCCTGAA
GGTAATAAGG AGCTTGCTAA ATTTGTCGCT GATCTCGCGG GCGTTACAGA ACGTGATGTC
AAAGTGGTTC GCGGCTATCG ACAAATACCG CGGGTATCGG AGTCGCTGAT TCGTCATGAA
TATCCCACAT CTTTAACTTC TCTTAAATCT TTGAGCCCTC AGGATCTTTA CCAACAGCTT
TGTCATTACC GTGTGGCCCA GCAATTGCGT CAGGCGTTAA CTCATCCCGG ACGGCAGGCA
GTACGTTTGA GTGAGTTGCT CAATGTTGCC AGAAGAACCT GGCCAGATAT TAATCACCGT
GAGTTACTGC AACTCCTCGA CCTAATGGCG AGATCGCGAG AAGGTGAACT GGCTTTTACG
CCATTACGTA TGCATGGGTT TATCAGAACA CTGGCGGGTC TATGGGCATG TTCAAACAAA
CAATGCTCAC ATAAAGCGCA TGAATTAAAT CAGAGTGACT GGCCATTTGG TCAGGTATGG
TTTGAGCAGC GCCAATATTG TGACTGTGGT GCGCCGGTAT TTGAAGTTTT ACGTTGCTCC
GGGTGTGGTT CAGCTTATTT GTCTGCCAAA GAGGAGGTGC GCGGTGATGG AACGAACTGG
TTGGTAGCGC AACCCGCCGC TGCCGAAGTG GATGAATTTG CTCTTGATGT AGATGTTTAT
TCTGAAGATG AAGACAACGA CGAATTAGAC AATAACTCTC AATTTGATCG TCTGATTGCG
ATCGATGGTG AAAAATATAT CATTTCTCTG GAAGAAACGA CGGCGGGGAA AATTGATAGT
GAAGCGCAAA AGCACTATGA AATAAACCTG TTAAGACCGG AATCTCGAGG TGAGGGACGT
AATAATTCCT TTGCTTGTGT TTGCTGTGGT GACACCCAAC GAAAAAATAA TCCTTTATTC
CGTCCGCTTC GACTTGGCGC GCCCTTTTTT TTAAATGAAA TTATTCCTAC TCTGCTGGAG
TTTTCACCAT TACCGCAGAC AAGAGAAGAG CAGTTAGGAC CGTTTAATGG TCGACGTCTG
CTCACCTTTA CGGATTCACG TCAGGGCACT GCCCGCATTT CTGCCCGCTT ACAGCAGGAT
GCCGATAAAG CGACGTTGCG AGCTCTTTGT TACCAGGAGT TGGCCAATAT TAATGAGCCA
TCAGCAAAGC TCAGCCCGGC ACACTGCGCA TTGTTAGAGA GTTTTATTAC CCAGTTTTCT
ATCCTTCCTT TAAAAAACTC TATTGACGCG CTGAAAAAAG CGATGGTTGC TAATGAAGAG
CTTAGCCCGG CGGACATTCA GGCACTTAAA ATTATCGAGC CGATGGTGAG TTCCTTAAGC
CCGGATCATG CTGAAGCGAT GCAAATACTC CAGGCTAACT CTGGCAATCA GCAGAAGAAA
ACCATGTCAT GGCAAACACT GTCTGAACAG CTGGTTGGCA GTGTGGACCT TGCCGATAGA
ATGAGAGGCA GTTTTAAAGA ATTGTCTGGG CTTGATCTTA CTAAACAACA GTTTGCAGAT
TTTTGTTTAT ACAGTGAGTT TGGTCGCCGC CCTAAAAATG CCTGGACCCT CGAAAGTCTG
GGTCTGGTAG CCATTCACTA TCCATTTATT GATAAAGTTA CAACCTGCCC GCAGGACTGG
AAGACATTAT TACCCGATCC CGATAAGCAA TTAGCGGAAT GGCGTAATTT ATTGAAGATT
ACTCTTGATT TCTTTATACG TGAAAACAGT GCCGTTTTTT ACGAAAACGA GCAATACCCT
CGCTGGATGG GGGCTCGTTT CCCGGTAAAA ATGCTCCAGG GTCCAGATAA AAAAAACAAA
GGGCAGAAAC GTGATCAACT TTGGCCACAA ATACGCGATC GCCATTATAA CCGGGTCATT
AAGCTATTAA TTGCAGTCTT TCCGGCAATA CAACCTGAGC AGGCTCACTG GAAATCGTTA
GTTAACCACT TAATGATTGA GGTCTGGGAT GCAATTCGAC CCTGCTTACG TCAGTTTGAG
TCGGGTTATC AGCTGGATAT TAAACAACAA GCTGAATTTT ACAGTCCAAA GCAAGTGTGG
CGTTGCCCCT ATACTCGACG TGCGTTAGAC GTCACGTTAC TGGGATACTC TCCGTATTTG
CCGGGTAGCA AAGAAATTGC ACCTGAAAAA GCAGTGTTGA TTGAAATGCC TGAGCTTCCT
GTACGTCACT GGCGTTTGTC TGGTGGTGGA GAAATCGCCC GAGAAGAACG TCTGGAGTGG
CTGGAAAGTA ATGCGCTGAT TCAACATGCC CGCGAGGAAG GATTATGGTC TACTCGCAGC
GACCGACTGG CCCTGAAAGA TAGCTGGTAT CGTCTGGAGG AACACTCTGC GCAGAGAACG
CCTGAGCAGA ACCAGTTTAA TGAAAAACAA TTTAAGTCAG GCAAAGTTAA TGTGCTGAAC
TGCTCCACGA CCATGGAGAT GGGGGTGGAC ATTGGTGGTA TGAGTTTGGT GGCAATGAAC
AACGTTCCTC CAGCTCCGGC AAATTATTTG CAGCGTGCAG GCCGCGCGGG TCGACGTGGA
GAGAGTGCAT CTGCTGCCAT TACGTTATGT AAAAACACGG CGCATGGAAT GGAGGTATTC
AAAGACCCCC TCTGGGCGTT CAACACTACT GCCAGTGCGC CACGGGTTCG TTTTGGGAGC
AGCAGTATTG TTCAACGACA TGTTAATGCC CTGGTTTTAG GTCTGTTTTT ACGAGCTGAA
GTTCCTGATG CGACAAAACT GAGTTGCAAA TGGTTCTTTG AAGGTGATGA GAGCCAGTGT
CTTCGTTTTC TCCATTGGTT AAATAACCAG GCCGATCAGC TGGCGGATAA ACTTAAACGC
CTTACTCAGG GAACCGTCCT GATGTCATTG ACGGCAACCC AGCTCTTGAC CCGCACACAA
GCAATGATGC AGCAGGTTGA TATCCGCTGG AGAAGCCAAC TTGCGATACT GTTGGAAAAT
ATCGAAGCGT TGAAGGCGGA TAACAGCGCG TGGGAAGAAA CGCCAGCAGG TAAAGCCATC
GCTTATCAGC TTCGTGATTA TCGCGGTGCA TATCTGTTTT CTAAACTCAT TAGTGAAGCG
TTCCTGCCGG GGCATGGTTT CCCGGTTGGC GTCGTCAATT TCAATTATCT GACGGCAGAT
GAGCTGGAAA AACGTCGCGC AATAAAAGCC ACTCAGGCTG ACCCTAATGA AGGGGGAGAA
AGCTTTTCTC GTCGTATTGA AAAATTGCCC AGCCGTGATT TGCCTACAGC ATTACGCGAG
TATGCTCCAG GTGCAGATGT GGTATTGGGC GGAAAAGTAT ATCGTTCCTC GGGCATTATG
CTTGGCAAGG TACTTGCCAG CGGGCAGGAG CTGTCAGGCG ATCATCATAT TCCGTGGTTC
TGGCATTGTC GTAAATGTGG TGCGGGGGCA ACCAGTACTA CCCGTCCTGT CGAATGTAGT
CACTGCAAAG CGGATATACA GCAACTTGAT GTGAAGCGTT ATTTACAGCC TGTTGGTTTT
GCGACAGATA TCCGTTATCA GGCGCATAAT GATGTATCCA TGCCTGCACA ACTTCCCTGG
AAAGATCCAC GTGTTCTTGT ACCGTCTTCG GTGTGGGTTT CTTTACCCGA TGCTGGGCTA
GGACGTTACC GTTTTAGCCA TAGTGGGGAA TTGTTCCACT TCAGTGAAGG GGAATTTGGG
CACGGCTACG CAATTTGCCT CTCATGTGGT CGGGCAGAAT CTCAAAATCA ACCCCAGCGT
ACCCCTGAAA ATCTTAAGAA CCCAGAGAGG GAAAATACGC ATTACCTGTT GCGAGGGGGC
AGTAACGATC GTCAGGGGAG CAATAAATTG TGCCACGGTC ATGTGCATAA AGATCTGTGG
TTGGGGTATA GCAGTCGTAC AGATATGGTT GAGCTGCAAC TCAATGATGA TAATGGCCTG
TTGATCCGTG ATGAGGTTGC CGCGCGATCC CTTGCGGTCG CTTTGCGTGA AGGGTTAGCG
CATAAATTGG GTATCGAAAA TACTGAGCTG GGCGTGACGA CGCAGCAAGC GCGCGATATC
AATGGCTATA CCGGATATTC CATCTTCATT TACGACAATA ATGCGGGTGG TGCAGGTTAT
GCAGTGCAAT TGATCGACCA TTGGGCTGAT GTCTTTAATT ACGCCAGAAA ATTGCTCGAT
TGCAGTTGCG ATAAATTCTG TCACCACTGC TTGCTCAGCT ACGACAGTCA GCATTATGTC
AACAGATTAG ATCGTCACCA TGCATTAACC CTGCTTACCA ATGTACGGTT GCAGCGACTT
AACCTCGCGC CAGAATATCA GTACTTCGGC GATGGTAGCC GGGTTGAAAC TAACCCGCTG
AGTTTACGTA TTGCGCAATG CCTGAACAGC GAGATTTATG ACTCCTGCTC GCTGGTTCTT
GCGGGGCCGC AGGAACAGTG GGATTTTGCC CAATGGCCAT TATTTAAAGA GTTGCTCCAG
TTTGCCTCCT CCGGTGGGCA TGTTGAGTTG CTGGTGGCCA CGCCGTTGGC AAACTTAACT
GATAGCTCCA GACATCAGCT TTCCGCGTTG GCGGCGATGC CGGGAGGACG CTTACAAGTG
AAATCCATTG CCACTGCGCA ACTCATGCAA GGAAAGGGAC GCTGGCTTGC GCAGGTGACT
CGCGAAGGGC AAAGCCAACA GTGGGCCGCA GACGACAGCG CTACCGTTGC ACCTGGTGAA
TTATGGGGAC AAAGTGCGTC TTCACCAGTA GTGACACTTA AAGGAACGTC CGGAAAAACC
TTCTTGGGTC AGATCTTAAG TGCAGAAGAT TTACTGCCCG CCTTACCCAC CGGGGCGGTG
CGCATCAATC TCTGCGAACA ACTGGACGGG CCGCTGGAAG GTTTTGGTTC GCGTTTCTGG
TCGTTAGTCA CGCAACAGCA CGCTGGCTGG AAGCAGGCAT TTACCCGCCA CAAAGAGATA
ACGCATGTTG AGTACAGCGA TCGTTATCTT AATAGCCCAT TCACGGCGCG TTTGTTAGGT
GAAATCTTAA CTGAGCTGGT TGAACAGGGA ATGGCGGAAC GCGCCAGCCT CACTGTTTGC
GTCAAAAAAT TGGATTACAA CTCTCGCCAA CACGACGCTC TCTATAACGC GTGGCTTAAT
GAGGAAGATC GTCAGCAGGT TGTGACCACT TTACTTGAAG AAGGATATCT GGGGCCAGCG
TGGCTGGGAG CAATTAGCTG GTTAACGGGG GATAACCAGA GTACGGAGCA TGGACGAGAA
CTGACAGTCA CCTTCAGCGA TGGCAGTCAG CATTATGTCC TGCTCGACAT GGGGCTTAGC
TACTGGCGCT GTATTGAAGA CACCTTCTTT GATTTTGCTC TACGAGTACC GCAGCAAGTT
GAACGGCTGG CAAACACGCG AGCGCGAGCT GTTGCCCCGG GTAATGACCT TAGGAGTTAT
ATTATCGCTG GATAA
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| Protein sequence | MDVQQLHYAP LLNQLHQRAV RSVVSQLALR SKSLTHYLES QYFQPPGQEG SLLADPVFES
TFGWMPADET MEDLRDKLIS SPLVDALSKA PVPFRHQLTA WRTILEDKKS LLVSSGTGSG
KTECFMVPVL EDLIRQQKST RQSLTGTQAI FLYPLNALIN SQQERLREWT RGFKGKIRFA
LYNGETRHTK YEVQEDQLKV PEQALSREAI YEAPPSIMVT NTTMLEYMLI RRKDAPIIEK
SQGMLKYIVL DEAHSYIGSQ AAELALLLRR VMQAFNVGPG TDKPVQIIAT SATIGEDSPE
GNKELAKFVA DLAGVTERDV KVVRGYRQIP RVSESLIRHE YPTSLTSLKS LSPQDLYQQL
CHYRVAQQLR QALTHPGRQA VRLSELLNVA RRTWPDINHR ELLQLLDLMA RSREGELAFT
PLRMHGFIRT LAGLWACSNK QCSHKAHELN QSDWPFGQVW FEQRQYCDCG APVFEVLRCS
GCGSAYLSAK EEVRGDGTNW LVAQPAAAEV DEFALDVDVY SEDEDNDELD NNSQFDRLIA
IDGEKYIISL EETTAGKIDS EAQKHYEINL LRPESRGEGR NNSFACVCCG DTQRKNNPLF
RPLRLGAPFF LNEIIPTLLE FSPLPQTREE QLGPFNGRRL LTFTDSRQGT ARISARLQQD
ADKATLRALC YQELANINEP SAKLSPAHCA LLESFITQFS ILPLKNSIDA LKKAMVANEE
LSPADIQALK IIEPMVSSLS PDHAEAMQIL QANSGNQQKK TMSWQTLSEQ LVGSVDLADR
MRGSFKELSG LDLTKQQFAD FCLYSEFGRR PKNAWTLESL GLVAIHYPFI DKVTTCPQDW
KTLLPDPDKQ LAEWRNLLKI TLDFFIRENS AVFYENEQYP RWMGARFPVK MLQGPDKKNK
GQKRDQLWPQ IRDRHYNRVI KLLIAVFPAI QPEQAHWKSL VNHLMIEVWD AIRPCLRQFE
SGYQLDIKQQ AEFYSPKQVW RCPYTRRALD VTLLGYSPYL PGSKEIAPEK AVLIEMPELP
VRHWRLSGGG EIAREERLEW LESNALIQHA REEGLWSTRS DRLALKDSWY RLEEHSAQRT
PEQNQFNEKQ FKSGKVNVLN CSTTMEMGVD IGGMSLVAMN NVPPAPANYL QRAGRAGRRG
ESASAAITLC KNTAHGMEVF KDPLWAFNTT ASAPRVRFGS SSIVQRHVNA LVLGLFLRAE
VPDATKLSCK WFFEGDESQC LRFLHWLNNQ ADQLADKLKR LTQGTVLMSL TATQLLTRTQ
AMMQQVDIRW RSQLAILLEN IEALKADNSA WEETPAGKAI AYQLRDYRGA YLFSKLISEA
FLPGHGFPVG VVNFNYLTAD ELEKRRAIKA TQADPNEGGE SFSRRIEKLP SRDLPTALRE
YAPGADVVLG GKVYRSSGIM LGKVLASGQE LSGDHHIPWF WHCRKCGAGA TSTTRPVECS
HCKADIQQLD VKRYLQPVGF ATDIRYQAHN DVSMPAQLPW KDPRVLVPSS VWVSLPDAGL
GRYRFSHSGE LFHFSEGEFG HGYAICLSCG RAESQNQPQR TPENLKNPER ENTHYLLRGG
SNDRQGSNKL CHGHVHKDLW LGYSSRTDMV ELQLNDDNGL LIRDEVAARS LAVALREGLA
HKLGIENTEL GVTTQQARDI NGYTGYSIFI YDNNAGGAGY AVQLIDHWAD VFNYARKLLD
CSCDKFCHHC LLSYDSQHYV NRLDRHHALT LLTNVRLQRL NLAPEYQYFG DGSRVETNPL
SLRIAQCLNS EIYDSCSLVL AGPQEQWDFA QWPLFKELLQ FASSGGHVEL LVATPLANLT
DSSRHQLSAL AAMPGGRLQV KSIATAQLMQ GKGRWLAQVT REGQSQQWAA DDSATVAPGE
LWGQSASSPV VTLKGTSGKT FLGQILSAED LLPALPTGAV RINLCEQLDG PLEGFGSRFW
SLVTQQHAGW KQAFTRHKEI THVEYSDRYL NSPFTARLLG EILTELVEQG MAERASLTVC
VKKLDYNSRQ HDALYNAWLN EEDRQQVVTT LLEEGYLGPA WLGAISWLTG DNQSTEHGRE
LTVTFSDGSQ HYVLLDMGLS YWRCIEDTFF DFALRVPQQV ERLANTRARA VAPGNDLRSY
IIAG
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