| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4692 |
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| Symbol | cpdB |
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| ID | 6145344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4790565 |
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| End bp | 4792508 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641619508 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_001746616 |
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| Protein GI | 170683745 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGT TTAGCGCAAC GCTCCTGGCC ACGCTGATTG CCGCCAGTGT GAATGCAGCG
ACGGTCGATC TGCGTATCAT GGAAACCACT GATCTGCATA GCAACATGAT GGATTTCGAT
TATTACAAAG ACACCGCCAC GGAAAAATTC GGACTGGTAC GTACGGCAAG CCTGATTAAT
GATGCCCGCA ATGAAGTGAA AAACAGCGTA CTGGTCGATA ACGGCGATTT GATTCAGGGG
AGTCCGCTGG CAGATTACAT GTCGGCGAAA GGATTAAAAG CAGGTGATAT TCACCCGGTC
TATAAGGCAT TAAATACGCT GGACTATACC GTCGGCACGC TTGGCAACCA TGAGTTTAAC
TACGGTCTGG ATTACCTGAA AAATGCGCTG GCGGGAGCGA AATTCCCTTA TGTAAATGCC
AACGTCATTG ACGCCAGAAC CAAACAGCCA ATGTTTACAC CGTATTTAAT TAAAGACACC
GAAGTGGTCG ATAAAGACGG AAAAAAACAG ACGCTGAAGA TTGGCTATAT TGGCGTCGTA
CCGCCGCAAA TCATGGGCTG GGATAAAGCT AATTTATCCG GGAAAGTGAC GGTGAATGAT
ATTACCGAAA CCGTGCGCAA ATACGTGCCT GAAATGCGCG AGAAAGGTGC CGATGTCGTT
GTCGTTCTGG CGCATTCCGG GCTGTCTGCC GATCCGTATA AAGTGATGGC GGAAAACTCA
GTTTATTACC TCAGTGAAAT TCCGGGCGTT AACGCCATTA TGTTTGGCCA TGCTCACGCC
GTTTTCCCGG GTAAAGATTT TGCTGATATC GAAGGAGCTG ATATCGCGAA AGGCACGCTG
AATGGTGTTC CGGCGGTAAT GCCAGGCATG TGGGGCGATC ATCTTGGTGT GGTCGACTTA
CAACTCAGTA ATGACAGCGG TAAATGGCAG GTAACACAGG CGAAAGCGGA AGCACGACCG
ATTTACGACA TCGCTAATAA AAAATCCCTC GCGGCGGAAG ACAGCAAGCT GGTAGAAACA
CTCAAAGCCG ATCACGATGC CACACGCCAG TTCGTCAGCA AGCCAATCGG TAAATCTGCC
GACAATATGT ATAGCTATCT GGCACTGGTG CAGGACGATC CGACCGTGCA GGTGGTGAAC
AACGCGCAAA AAGCGTATGT CGAGCATTAC ATTCAGGGCG ATCCGGATCT GGCAAAACTG
CCAGTGCTTT CAGCTGCCGC ACCGTTTAAA GTTGGTGGTC GCAAAAATGA CCCGGCAAGC
TATGTGGAGG TGGAAAAAGG TCAGCTGACT TTCCGTAATG CCGCCGATCT TTATCTCTAC
CCCAATACGC TGATTGTGGT GAAAGCCAGC GGTAAAGAGG TGAAAGAGTG GCTGGAATGC
TCTGCCGGAC AGTTTAACCA GATTGATCCT AACAGCACGA AACCACAGTC ACTCATTAAC
TGGGATGGTT TCCGCACTTA TAACTTTGAT GTGATTGATG GTGTGAATTA TCAGATTGAT
GTTACCCAGC CCGCCCGTTA TGACGGCGAG TGCCAGATGA TTAATGCCAA TGCGGAAAGG
ATTAAGAACC TGACCTTTAA CGGCAAGCCG ATTGATCCGA ACGCCATGTT CCTCGTTGCC
ACCAATAACT ATCGCGCTTA CGGCGGCAAA TTTGCCGGTA CGGGCGACAG CCATATCGCT
TTTGCTTCAC CGGATGAGAA CCGCTCGGTG CTGGCAGCGT GGATTGCTGA TGAGTCGAAA
CGTGCGGGGG AAATTCACCC GGCGGCAGAT AACAACTGGC GTTTAGCACC GATAGCCGGC
GATAAGAAAC TGGATATCCG TTTCGAAACC TCTCCGTCAG ATAAAGCCGC AGCGTTTATT
AAAGAAAAAG GGCAGTATCC GATGAATAAA GTCGCGACCG ATGATATCGG GTTTGCAATT
TATCAGGTGG ATCTGAGTAA GTAA
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| Protein sequence | MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIN
DARNEVKNSV LVDNGDLIQG SPLADYMSAK GLKAGDIHPV YKALNTLDYT VGTLGNHEFN
YGLDYLKNAL AGAKFPYVNA NVIDARTKQP MFTPYLIKDT EVVDKDGKKQ TLKIGYIGVV
PPQIMGWDKA NLSGKVTVND ITETVRKYVP EMREKGADVV VVLAHSGLSA DPYKVMAENS
VYYLSEIPGV NAIMFGHAHA VFPGKDFADI EGADIAKGTL NGVPAVMPGM WGDHLGVVDL
QLSNDSGKWQ VTQAKAEARP IYDIANKKSL AAEDSKLVET LKADHDATRQ FVSKPIGKSA
DNMYSYLALV QDDPTVQVVN NAQKAYVEHY IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS
YVEVEKGQLT FRNAADLYLY PNTLIVVKAS GKEVKEWLEC SAGQFNQIDP NSTKPQSLIN
WDGFRTYNFD VIDGVNYQID VTQPARYDGE CQMINANAER IKNLTFNGKP IDPNAMFLVA
TNNYRAYGGK FAGTGDSHIA FASPDENRSV LAAWIADESK RAGEIHPAAD NNWRLAPIAG
DKKLDIRFET SPSDKAAAFI KEKGQYPMNK VATDDIGFAI YQVDLSK
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