| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4683 |
|---|
| Symbol | |
|---|
| ID | 6145328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4781223 |
|---|
| End bp | 4781852 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641619499 |
|---|
| Product | opacity-associated family protein |
|---|
| Protein accession | YP_001746607 |
|---|
| Protein GI | 170681738 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3061] Cell envelope opacity-associated protein A |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000121219 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGGC GCTTTGAACT AAAACCAACC CTGGAGAAAG TCTGGCACGC GCCGGACAAT
TTTCGCTTCA TGGACCCGCT GCCGCCGATG CATCGCCGGG GAGTCATTAT TGCGGCAATA
GTGCTGATTA TCGGTATTCT TCTGCCTGGA GATGAAACAC GCCAGATGCC TGTTGTCACC
CGCGAAGCGC AGTTAGATAT GCAATCACCC CCCCCAGGTG AAGCACAGCT ACAGGCACAT
TTAGTGACGC CGCAAAACGA TCCGGATCAG GTCGCCCCGG TCGCGCCGGA ACCTATTCAG
GAAGGTCAAC CTGAAGAGCC ACCTGTTGCA GAGACACAAT CTTTCCAACC GGAAAGTGGT
ATCGATCAAC AGTGGCGGAC ATATCGCGTA GAACCAGGCA AGACCCTTGC CCAGCTGTTC
CGCGACCATA ATTTGCCGCC TACAGACGTG TACGCTATGG CCCAGGTCGA GGGCGCGGAT
AAACCACTCA GTAACCTGCA AAATGGTCAG ATTGTTAAAA TCCGTCAAAA TGCGAATGGG
GTGGTTACCG GCTTAACCAT TGATACGGGA AATAATCAGC AAGTCCTGTT CACCCGCCAA
CCTGATGGTA ATTTCATCCG CGCACGCTGA
|
|---|
| Protein sequence | MPGRFELKPT LEKVWHAPDN FRFMDPLPPM HRRGVIIAAI VLIIGILLPG DETRQMPVVT
REAQLDMQSP PPGEAQLQAH LVTPQNDPDQ VAPVAPEPIQ EGQPEEPPVA ETQSFQPESG
IDQQWRTYRV EPGKTLAQLF RDHNLPPTDV YAMAQVEGAD KPLSNLQNGQ IVKIRQNANG
VVTGLTIDTG NNQQVLFTRQ PDGNFIRAR
|
|---|
| |