Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4650 |
Symbol | rnr |
ID | 6144921 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 4751436 |
End bp | 4753877 |
Gene Length | 2442 bp |
Protein Length | 813 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641619466 |
Product | exoribonuclease R |
Protein accession | YP_001746574 |
Protein GI | 170681596 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 0.526461 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCTGAAAAAT ACGCGAATCC CATCCCTAGT CGGGAATTTA TCCTCGAACA TTTAACCAAA CGTGAAAAAC CGGCCAGCCG TGATGAGCTG GCGGTAGAAC TGCACATTGA AGGCGAAGAG CAGCTTGAAG GCCTGCGTCG CCGCCTGCGC GCGATGGAGC GCGATGGTCA ACTGGTCTTC ACTCGTCGTC AGTGCTATGC GCTGCCGGAA CGCCTCGACC TGGTGAAAGG TACCGTTATT GGCCACCGTG ATGGCTACGG CTTTCTGCGG GTTGAAGGGC GTAAAGATGA TTTGTATCTC TCCAGCGAGC AGATGAAAAC CTGCATTCAT GGCGATCAGG TGCTGGCGCA GCCGCTGGGC GCTGACCGTA AAGGTCGTCG TGAAGCGCGT ATTGTCCGCG TACTGGTGCC AAAAACCAGC CAGATTGTTG GTCGCTACTT TACCGAAGCG GGCGTCGGCT TTGTGGTTCC TGACGACAGT CGTTTGAGCT TCGATATCTT AATCCCGCCC GATCAGATCA TGGGCGCGCG GATGGGCTTT GTGGTGGTGG TTGAACTGAC CCAACGCCCG ACTCGCCGTA CCAAAGCGGT GGGTAAAATC GTCGAAGTAC TTGGCGACAA TATGGGCACC GGCATGGCGG TTGATATCGC TCTGCGTACC CATGAAATTC CGTATATCTG GCCGCAGGCT GTTGAGCAAC AAGTTGCCGG GCTGAAAGAA GAAGTGCCGG AAGAAGCAAA AGCGGGCCGT GTCGATTTGC GCGATTTACC GCTGGTCACC ATTGATGGCG AAGACGCCCG TGACTTTGAC GATGCAGTTT ACTGTGAGAA AAAACGCGGC GGCGGCTGGC GTTTATGGGT CGCGATTGCC GACGTCAGCT ACTATGTGCG TCCGCCAACA CCGCTGGACA GAGAAGCGCG TAACCGTGGT ACGTCGGTGT ACTTCCCTTC GCAGGTTATC CCGATGCTGC CGGAAGTGCT CTCTAACGGC CTGTGCTCGC TCAACCCGCA GGTAGACCGC CTGTGTATGG TGTGCGAGAT GACGGTTTCG TCGAAAGGCC GCCTGACTGG CTACAAATTC TATGAAGCGG TAATGAGCTC TCACGCACGT CTGACCTACA CCAAAGTCTG GCATATTCTG CAGGGCGATC AGGATCTGCG CGAGCAGTAC GCCCCGCTGG TTAAGCATCT CGAAGAGTTG CATAACCTCT ATAAAGTGCT GGATAAAGCC CGTGAAGAAC GCGGTGGGAT CTCATTTGAG AGCGAAGAAG CGAAGTTCAT TTTCAACGCT GAACGCCGTA TTGAACGTAT CGAACAGACT CAGCGTAACG ACGCCCACAA GTTAATTGAA GAGTGCATGA TTCTGGCGAA TATCTCGGCG GCGCGTTTCG TTGAGAAAGC CAAAGAACCG GCACTGTTCC GTATTCACGA CAAGCCGAGC ACCGAAGCGA TTACCTCTTT CCGTTCAGTG CTGGCGGAGC TGGGGCTGGA ATTGCCGGGC GGTAACAAGC CGGAACCGCG CGACTATGCA GAGTTACTGG AATCGGTTGC CGATCGTCCT GATGCAGAAA TGCTGCAAAC TATGCTGCTG CGCTCGATGA AACAGGCGAT TTACGATCCG GAAAACCGTG GTCACTTCGG TCTGGCATTG CAGTCCTATG CGCACTTTAC TTCGCCGATT CGTCGTTATC CTGACCTGAC GCTGCACCGC GCCATTAAAT ATCTGCTGGC GAAAGAGCAG GGGCATCAGG GCAACACCAC TGAAACCGGC GGCTACCATT ATTCGATGGA AGAGATGCTG CAACTGGGTC AGCACTGTTC GATGGCGGAA CGTCGTGCCG ACGAAGCAAC ACGCGATGTA GCTGACTGGC TGAAGTGTGA CTTCATGCTC GACCAGGTAG GTAACGTCTT TAAAGGCGTA ATTTCCAGCG TCACTGGCTT TGGCTTCTTC GTCCGTCTGG ACGACTTGTT CATTGATGGT CTGGTCCATG TCTCTTCGCT GGACAATGAC TACTATCGCT TTGACCAGGT AGGGCAACGC CTGATGGGTG AATCCAGCGG CCAGACTTAT CGCCTGGGCG ATCGCGTGGA AGTTCGCGTC GAAGCGGTTA ATATGGACGA GCGTAAAATC GACTTTAGCC TGATCTCCAG CGAACGCGCA CCGCGCAACG TCGGTAAAAC GGCGCGCGAG AAAGCGAAAA AAGGCGATGC AGGTAAAAAA GGCGGCAAGC GTCGTCAGGT CGGTAAAAAG GTAAACTTTG AGCCAGACAG CGCTTTCCGC GGCGAGAAAA AAACGAAGCC GAAAGCGGCG AAGAAAGACG CGAGAAAAGC GAAAAAGCCA TCGGCGAAAA CGCAGAAAAT AGCCGCAGCG ACCAAAGCGA AGCGTGCGGC GAAGAAAAAA GTGGCAGAGT GA
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Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASRDEL AVELHIEGEE QLEGLRRRLR AMERDGQLVF TRRQCYALPE RLDLVKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTEA GVGFVVPDDS RLSFDILIPP DQIMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDIALRT HEIPYIWPQA VEQQVAGLKE EVPEEAKAGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA DVSYYVRPPT PLDREARNRG TSVYFPSQVI PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS SKGRLTGYKF YEAVMSSHAR LTYTKVWHIL QGDQDLREQY APLVKHLEEL HNLYKVLDKA REERGGISFE SEEAKFIFNA ERRIERIEQT QRNDAHKLIE ECMILANISA ARFVEKAKEP ALFRIHDKPS TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESVADRP DAEMLQTMLL RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLTLHR AIKYLLAKEQ GHQGNTTETG GYHYSMEEML QLGQHCSMAE RRADEATRDV ADWLKCDFML DQVGNVFKGV ISSVTGFGFF VRLDDLFIDG LVHVSSLDND YYRFDQVGQR LMGESSGQTY RLGDRVEVRV EAVNMDERKI DFSLISSERA PRNVGKTARE KAKKGDAGKK GGKRRQVGKK VNFEPDSAFR GEKKTKPKAA KKDARKAKKP SAKTQKIAAA TKAKRAAKKK VAE
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