| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4477 |
|---|
| Symbol | |
|---|
| ID | 6146843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4575253 |
|---|
| End bp | 4576077 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641619293 |
|---|
| Product | PTS system mannose/fructose/sorbose family IID subunit |
|---|
| Protein accession | YP_001746405 |
|---|
| Protein GI | 170683591 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3716] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID |
|---|
| TIGRFAM ID | [TIGR00828] PTS system, mannose/fructose/sorbose family, IID component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.419116 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAGA GAAAAATTAC ACGCAGCGAT CTGGTGAGCA TGTTTCTGCG CTCCAACCTG
CAACAGGCAT CCTTTAACTT TGAACGTATT CACGGGCTGG GTTTTTGCTA CGACATGATC
CCCGCCATCA AACGACTTTA CCCATTAAAA GAGGATCAGG TTGCGGCGCT CAGGCGACAC
CTAGTGTTCT TCAATACCAC GCCAGCCGTA TGTGGCCCGG TCATCGGCGT CACTGCCGCC
ATGGAAGAGG CGCGAGCCAA CGGCGCGGAA ATTGATGACG GTACCATTAA CGGCATCAAA
GTCGGCCTGA TGGGACCGTT GGCAGGTGTT GGCGATCCAC TGGTCTGGGG AACGCTGCGC
CCGATTACCG CCGCGCTCGG CGCATCTCTG GCACTTTCGG GCAACATTCT CGGCCCCCTG
CTGTTCTTCT TTATTTTCAA TGCAGTACGT CTGGCAATGA AATGGTATGG GCTGCAACTG
GGCTTTCGTA AAGGGGTGAA TATCGTCAGC GATATGGGCG GTAATTTGCT GCAAAAACTG
ACCGAAGGCG CGTCGATTCT CGGGCTGTTT GTAATGGGCG TACTGGTGAC CAAATGGACA
TCGATCAACG TGCCGTTAGT GGTTTCACAA ACGCCTGCCG CCGATGGTGC CACCGTCACT
ATGACCGTAC AGAACATTCT CGACCAGCTT TGCCCTGGAT TGCTGGCGCT CGGTTTGACG
CTGCTGATGG TACGTCTGCT CAACAAAAAA ATTAACCCGG TATGGCTGAT TTTCGCCCTG
TTTGGTTTAG GGATTATCGG TAATGCGCTG GGCTTCCTGT CCTGA
|
|---|
| Protein sequence | MEQRKITRSD LVSMFLRSNL QQASFNFERI HGLGFCYDMI PAIKRLYPLK EDQVAALRRH
LVFFNTTPAV CGPVIGVTAA MEEARANGAE IDDGTINGIK VGLMGPLAGV GDPLVWGTLR
PITAALGASL ALSGNILGPL LFFFIFNAVR LAMKWYGLQL GFRKGVNIVS DMGGNLLQKL
TEGASILGLF VMGVLVTKWT SINVPLVVSQ TPAADGATVT MTVQNILDQL CPGLLALGLT
LLMVRLLNKK INPVWLIFAL FGLGIIGNAL GFLS
|
|---|
| |