| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4475 |
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| Symbol | |
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| ID | 6146081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4573167 |
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| End bp | 4573979 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641619291 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001746403 |
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| Protein GI | 170681241 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.685728 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.485924 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAATC GCGATACTCA ACTCTGCATG TCGCTGGCCG GCCGCCCCGG TAACTTCGGC
ACGCGTTTTC ACAATTATCT TTATGAAAAG CTGGGGCTGA ATTTCATCTA TAAAGCGTTC
ACCACCCAGG ATATTGCAGC GGCGGTGAAA GGGATTCGCG CGTTGGGTAT TCGCGGTTGC
GCTGTGTCGA TGCCGTTTAA AGAAAGCTGC ATGCCTTTTC TCGACGCGAT CGATCCGTCG
GCGAAGGTCA TTGATTCCGT GAATACCATC GTGAATGACG ACGGCAGGCT GACCGGGTTT
AACACCGACT ATATCGCGGT GAAAAGCCTG ATTACCCACC ACCAGCTCAA TACCACCACG
CGAGTGATGA TTCGCGGCAG TGGCGGCATG GGCAAAGCGG TGATTGCCGC CTTTCGCGAC
GCGGGGTTTA CGGATGTTAT CATTGCCGCC CGCAACCGCG AGAGCGGCCC GGCGCTGGCG
AAGCAGTATG GGTTTCAGTG GCAACCGCAG CCGGAAGGCA TCGCCTGCGA CATTCTGGTC
AACGTGACGC CCGTTGGCAT GAGCGGCGGT AAAGAGAGCC ATGAGCTGGC CTTCAGCGAA
GCGATGGTCT CAACGGCAAG CGTCGTTTTT GATGTCGTGG CCTTGCCGCC GGAAACGCCG
CTCATTCGCC TGGCGCAACG GCTTGATAAG CAGACGATTA GCGGTGCGGA GGTGATTGCT
TTACAGGCCG TCGAGCAGTT CGCAATGTAT ACCGGCGTAC GGCCTGATGC GCAACTGATT
GCTGAGGCGG CACAATTTGC ACGAGAAGGA TAA
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| Protein sequence | MINRDTQLCM SLAGRPGNFG TRFHNYLYEK LGLNFIYKAF TTQDIAAAVK GIRALGIRGC
AVSMPFKESC MPFLDAIDPS AKVIDSVNTI VNDDGRLTGF NTDYIAVKSL ITHHQLNTTT
RVMIRGSGGM GKAVIAAFRD AGFTDVIIAA RNRESGPALA KQYGFQWQPQ PEGIACDILV
NVTPVGMSGG KESHELAFSE AMVSTASVVF DVVALPPETP LIRLAQRLDK QTISGAEVIA
LQAVEQFAMY TGVRPDAQLI AEAAQFAREG
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