Gene EcSMS35_4445 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_4445 
SymbolhemE 
ID6144888 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp4542247 
End bp4543311 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content56% 
IMG OID641619265 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_001746381 
Protein GI170683454 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.000531857 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGAAC TTAAAAACGA TCGTTATCTG CGGGCGCTGC TGCGCCAGCC CGTTGATGTC 
ACTCCAGTAT GGATGATGCG CCAGGCGGGT CGCTATCTAC CGGAATATAA AGCCACGCGC
GCCCAGGCGG GCGATTTTAT GTCGCTGTGC AAAAACGCCG AGCTGGCGTG CGAAGTGACT
TTGCAACCGC TGCGTCGCTA CCCGCTGGAT GCGGCGATCC TCTTTTCCGA TATCCTCACC
GTGCCGGACG CGATGGGGTT AGGGCTCTAT TTTGAAGCCG GAGAAGGTCC GCGTTTTACC
TCGCCAGTCA CCTGCAAAGC CGACGTCGAT AAACTGCCAA TTCCGGACCC GGAAGATGAG
CTGGGTTACG TGATGAACGC GGTGCGTACC ATTCGTCGCG AACTGAAAGG CGAAGTGCCG
CTGATTGGTT TTTCTGGCAG CCCGTGGACG CTGGCGACCT ACATGGTGGA AGGCGGCAGC
AGCAAAGCCT TCACCGTGAT CAAAAAAATG ATGTATGCCG ATCCGCAGGC GCTGCACGCG
CTACTCGATA AACTGGCGAA AAGCGTCACT TTGTATCTGA ATGCGCAGAT TAAAGCCGGT
GCTCAGGCAG TGATGATTTT CGACACCTGG GGCGGCGTGC TTACCGGGCG CGATTATCAA
CAGTTCTCGC TCTATTACAT GCATAAAATT GTTGATGGTT TACTGCGTGA AAACGACGGT
CGCCGCGTAC CGGTCACGCT GTTTACCAAA GGTGGCGGAC AGTGGCTGGA AGCGATGGCA
GAAACCGGTT GCGATGCGCT GGGCCTCGAC TGGACAACGG ACATCGCCGA TGCGCGCCGT
CGCGTGGGCA ATAAAGTCGC GCTGCAGGGT AATATGGATC CGTCGATGCT GTACGCGCCA
CCTGCCCGCA TTGAAGAAGA AGTTGCGACT ATACTTGCCG GTTTCGGTCA CGGCGAAGGT
CATGTCTTTA ACCTTGGTCA CGGCATTCAT CAGGATGTGC CGCCAGAACA TGCTGGCGTG
TTTGTGGAGG CAGTGCATCG CTTGTCTGAA CAGTATCACC GCTAA
 
Protein sequence
MTELKNDRYL RALLRQPVDV TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNAELACEVT 
LQPLRRYPLD AAILFSDILT VPDAMGLGLY FEAGEGPRFT SPVTCKADVD KLPIPDPEDE
LGYVMNAVRT IRRELKGEVP LIGFSGSPWT LATYMVEGGS SKAFTVIKKM MYADPQALHA
LLDKLAKSVT LYLNAQIKAG AQAVMIFDTW GGVLTGRDYQ QFSLYYMHKI VDGLLRENDG
RRVPVTLFTK GGGQWLEAMA ETGCDALGLD WTTDIADARR RVGNKVALQG NMDPSMLYAP
PARIEEEVAT ILAGFGHGEG HVFNLGHGIH QDVPPEHAGV FVEAVHRLSE QYHR