| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4436 |
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| Symbol | rpoC |
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| ID | 6144315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4530801 |
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| End bp | 4535024 |
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| Gene Length | 4224 bp |
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| Protein Length | 1407 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641619256 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001746372 |
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| Protein GI | 170682674 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0000514009 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAAGCG CAGACTAAAA CCGAAGAGTT TGATGCGATC
AAAATTGCTC TGGCTTCGCC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACGTTCAAA CCAGAACGTG ACGGCCTTTT CTGCGCCCGT
ATCTTTGGGC CGGTAAAAGA TTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAACAC
CGTGGCGTCA TCTGTGAGAA GTGCGGTGTT GAAGTGACCC AGACTAAAGT ACGCCGTGAG
CGTATGGGCC ACATCGAACT GGCTTCCCCG ACTGCGCACA TCTGGTTCCT GAAATCGCTG
CCGTCCCGTA TCGGCCTGCT GCTCGATATG CCGCTGCGCG ATATCGAACG CGTACTGTAC
TTCGAATCCT ATGTGGTTAT CGAAGGCGGT ATGACCAACC TGGAGCGTCA GCAGATCCTG
ACTGAAGAGC AGTATCTGGA CGCGCTGGAA GAGTTCGGTG ACGAATTCGA CGCGAAGATG
GGTGCGGAAG CAATCCAGGC CCTGCTGAAG AGCATGGATC TGGAGCAAGA GTGCGAACAG
CTGCGTGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAAAAGCT GACCAAGCGT
ATCAAACTGC TGGAAGCGTT CGTTCAGTCT GGTAACAAAC CAGAGTGGAT GATCCTGACC
GTTCTGCCGG TACTGCCGCC AGATCTGCGT CCGCTGGTTC CGCTGGATGG TGGTCGTTTC
GCGACTTCTG ACCTGAACGA TCTGTATCGT CGCGTCATTA ACCGTAACAA CCGTCTGAAA
CGTCTGCTGG ATCTGGCTGC GCCGGACATC ATCGTACGTA ACGAAAAACG TATGCTGCAG
GAAGCGGTAG ACGCCCTGCT GGATAACGGT CGTCGCGGTC GTGCAATCAC CGGTTCTAAC
AAGCGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AACAGGGTCG TTTCCGTCAG
AACCTGCTCG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TAATCACCGT AGGTCCATAC
CTGCGTCTGC ATCAGTGCGG TCTGCCGAAG AAAATGGCAC TGGAGCTGTT CAAACCGTTC
ATCTACGGCA AGCTGGAACT GCGTGGTCTT GCTACCACCA TTAAAGCTGC GAAGAAAATG
GTTGAGCGCG AAGAAGCTGT CGTTTGGGAT ATCCTGGACG AAGTTATCCG CGAACACCCG
GTACTGCTGA ACCGTGCACC GACTCTGCAC CGTCTGGGTA TCCAGGCATT TGAACCGGTA
CTGATCGAAG GTAAAGCTAT CCAGCTGCAC CCGCTGGTTT GTGCGGCATA TAACGCCGAC
TTCGATGGTG ACCAGATGGC TGTTCACGTA CCGCTGACGC TGGAAGCCCA GCTGGAAGCG
CGTGCGCTGA TGATGTCTAC CAACAACATC CTGTCCCCGG CAAACGGCGA ACCAATCATC
GTTCCGTCTC AGGACGTTGT ACTGGGTCTG TACTACATGA CCCGCGACTG TGTTAACGCC
AAAGGCGAAG GCATGGTGCT GACTGGCCCG AAAGAAGCAG AACGTCTGTA TCGCTCTGGT
CTGGCTTCTC TGCATGCGCG CGTTAAAGTG CGTATCACCG AGTATGAAAA AGATGCTAAC
GGTGAATTAG TGGCGAAAAC CAGCCTGAAA GACACGACTG TTGGCCGTGC CATTCTGTGG
ATGATTGTAC CGAAAGGTCT GCCTTACACC ATCGTCAACC AGGCGCTGGG TAAAAAAGCA
ATCTCCAAAA TGCTGAACAC CTGCTACCGC ATTCTCGGTC TGAAACCGAC CGTTATTTTT
GCGGACCAGA TCATGTATAC CGGCTTTGCC TATGCAGCGC GTTCTGGTGC ATCTGTTGGT
ATCGATGACA TGGTCATCCC GGAGAAGAAA CACGAAATCA TCTCCGAGGC AGAAGCAGAA
GTTGCTGAAA TTCAGGAGCA GTTCCAGTCT GGTCTGGTAA CTGCGGGCGA ACGCTACAAC
AAAGTTATCG ATATCTGGGC TGCGGCGAAC GATCGTGTAT CCAAAGCGAT GATGGATAAC
CTGCAAACTG AAACCGTTAT TAACCGTGAC GGTCAGGAAG AGAAGCAGGT TTCCTTCAAC
AGCATCTACA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGCTG
GCGGGTATGC GTGGTCTGAT GGCGAAGCCG GATGGCTCCA TCATCGAAAC GCCAATCACC
GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACCCA CGGTGCTCGT
AAAGGTCTGG CGGATACCGC ACTGAAAACG GCGAACTCCG GTTACCTGAC TCGTCGTCTG
GTTGACGTGG CGCAGGACCT GGTGGTTACC GAAGACGATT GTGGTACCCA TGAAGGTATC
ATGATGACTC CGGTTATCGA GGGTGGTGAC GTTAAAGAGC CGCTGCGCGA TCGCGTATTG
GGTCGTGTAA CTGCTGAAGA CGTTCTGAAG CCGGGTACTG CTGATATCCT CGTTCCGCGC
AACACGCTGC TGCACGAACA GTGGTGTGAC CTGCTGGAAG AGAACTCTGT CGACGCGGTT
AAAGTACGTT CTGTTGTATC TTGTGACACC GACTTTGGTG TATGTGCGCA CTGCTACGGT
CGTGACCTGG CGCGTGGCCA CCTCATCAAC AAAGGTGAAG CAATCGGTGT AATCGCGGCA
CAGTCCATCG GTGAACCGGG TACACAGCTG ACCATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCTCGTG CGGCTGCTGA ATCCAGCATC CAGGTGAAAA ACAAAGGTAG CATCAAGCTC
AGCAACGTGA AGTCGGTTGT GAACTCCAGC GGTAAACTGG TTATCACTTC CCGTAACACC
GAACTGAAAC TGATCGACGA ATTCGGTCGT ACCAAAGAAA GCTACAAAGT ACCTTACGGT
GCGGTACTGG CGAAAGGCGA TGGCGAACAG GTTGCTGGCG GCGAAACCGT TGCAAACTGG
GACCCGCACA CCATGCCGGT TATCACCGAA GTAAGCGGTT TTGTACGCTT TACTGACATG
ATCGACGGCC AGACCATTAC TCGTCAGACC GACGAATTGA CCGGTCTGTC TTCGCTGGTG
GTTCTGGATT CCGCAGAACG TACCGCAGGT GGTAAAGATC TGCGTCCGGC ACTGAAAATC
GTTGATGCTC AGGGTAACGA CGTTCTGATC CCGGGTACCG ATATGCCTGC GCAGTACTTC
CTGCCGGGTA AAGCGATTGT TCAGCTGGAA GATGGCGTAC AGATCAGCTC TGGTGACACC
CTGGCGCGTA TTCCGCAGGA ATCCGGCGGT ACCAAGGACA TCACCGGTGG TCTGCCGCGC
GTTGCGGACC TGTTCGAAGC ACGTCGTCCG AAAGAGCCGG CAATCCTGGC TGAAATCAGC
GGTATCGTTT CCTTCGGTAA AGAAACCAAA GGTAAACGTC GTCTGGTTAT CACCCCGGTA
GACGGTAGCG ATCCGTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA
GGTGAACGTG TAGAACGTGG TGACGTAATT TCCGACGGTC CGGAAGCGCC GCACGACATT
CTGCGTCTGC GTGGTGTTCA TGCTGTTACT CGTTACATCG TTAACGAAGT ACAGGACGTA
TACCGTCTGC AGGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG
CTGCGTAAAG CTACCATCGT TAACGCGGGC AGCTCCGACT TCCTGGAAGG TGAACAGGTT
GAATACTCTC GCGTCAAGAT CGCAAACCGC GAACTGGAAG CGAACGGCAA AGTGGGGGCA
ACTTACTCCC GCGATCTGCT GGGTATCACC AAAGCGTCTC TGGCAACCGA GTCCTTCATC
TCCGCGGCAT CGTTCCAGGA GACCACTCGC GTGCTGACCG AAGCAGCCGT TGCGGGCAAA
CGCGACGAAT TGCGCGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT CCCGGCAGGT
ACCGGTTACG CGTACCACCA GGATCGTATG CGTCGCCGTG CTGCGGGTGA AGCTCCGGCT
GCACCGCAGG TGACTGCAGA AGACGCATCT GCCAGCCTGG CAGAACTGCT GAACGCAGGT
CTGGGCGGTT CTGATAACGA GTAA
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| Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL
PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM
GAEAIQALLK SMDLEQECEQ LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY
LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERLYRSG
LASLHARVKV RITEYEKDAN GELVAKTSLK DTTVGRAILW MIVPKGLPYT IVNQALGKKA
ISKMLNTCYR ILGLKPTVIF ADQIMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE
VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEKQVSFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI MMTPVIEGGD VKEPLRDRVL
GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEENSVDAV KVRSVVSCDT DFGVCAHCYG
RDLARGHLIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL
SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVLAKGDGEQ VAGGETVANW
DPHTMPVITE VSGFVRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTAG GKDLRPALKI
VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR
VADLFEARRP KEPAILAEIS GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE
GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM
LRKATIVNAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TYSRDLLGIT KASLATESFI
SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEAPA
APQVTAEDAS ASLAELLNAG LGGSDNE
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