| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4297 |
|---|
| Symbol | rhaS |
|---|
| ID | 6146867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 4400164 |
|---|
| End bp | 4401000 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641619118 |
|---|
| Product | transcriptional activator RhaS |
|---|
| Protein accession | YP_001746242 |
|---|
| Protein GI | 170684163 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.082999 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTAT TACATAGTGT GGATTTTTTT CCGTCTGGTA ACGCGTCCGT GGCGATAGAA
CCCCGGCTCC CGCAGGCGGA TTTTCCTGAA CATCATCATG ATTTTCATGA AATTGTGATT
GTCGAACATG GCACGGGTAT TCATGTGTTT AATGGGCAGC CCTATACCAT CACCGGGGGG
ACGGTCTGTT TCGTACGCGA TCATGATCGG CATCTGTATG AACATACCGA TAATCTGTGT
CTGACCAATG TGCTGTATCG CTCGCCGGAT CGATTTCAGT TTCTCGCCGG GCTGAATCAG
TTGCTGCCAC AAGAGCAGGA TGGGCAGTAT CCGTCTCACT GGCGCGTTAA CCACAGCGTG
TTGCAGCAGG TGCGACAGCT GGTTGCACAG ATGGAACAGC AGGAAGAGGA AAATGATTTA
CCCTCGACCG CCAGTCGCGA GATCTTATTT ATGCAATTAC TGCTCTTGCT GCGTAAAAGC
AGTTTGCAGG AGAACCTGGA AAACAGCGCG TCACGTCTCA ACTTGCTTCT GGCCTGGCTG
GAGGACCATT TTGCCGATGA GGTGAATTGG GATGCCGTGG CGGATCAATT TTCTCTTTCG
CTGCGTACGC TACATCGGCA GCTTAAGCAG CAAACGGGAC TGACGCCTCA GCGTTACCTG
AACCGCCTGC GACTGATGAA GGCCCGACAT CTGCTACGCC ACAGTGAGGC CAGCGTTACT
GACATCGCCT ATCGCTGCGG ATTTAGCGAC AGTAACCACT TTTCGACGCT TTTTCGCCGA
GAGTTTAACT GGTCACCGCG TGATATTCGT CAGGGACGGG ATGGCTTTCT GCAATAA
|
|---|
| Protein sequence | MTVLHSVDFF PSGNASVAIE PRLPQADFPE HHHDFHEIVI VEHGTGIHVF NGQPYTITGG
TVCFVRDHDR HLYEHTDNLC LTNVLYRSPD RFQFLAGLNQ LLPQEQDGQY PSHWRVNHSV
LQQVRQLVAQ MEQQEEENDL PSTASREILF MQLLLLLRKS SLQENLENSA SRLNLLLAWL
EDHFADEVNW DAVADQFSLS LRTLHRQLKQ QTGLTPQRYL NRLRLMKARH LLRHSEASVT
DIAYRCGFSD SNHFSTLFRR EFNWSPRDIR QGRDGFLQ
|
|---|
| |