Gene EcSMS35_4189 details

Gene Information

• Locus tag: EcSMS35_4189
• Symbol: recQ
• ID: 6145557
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: +
• Start bp: 4287169
• End bp: 4289004
• Gene Length: 1836 bp
• Protein Length: 611 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 641619012
• Product: ATP-dependent DNA helicase RecQ
• Protein accession: YP_001746140
• Protein GI: 170680861
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0514] Superfamily II DNA helicase
• TIGRFAM ID: [TIGR00614] ATP-dependent DNA helicase, RecQ family; [TIGR01389] ATP-dependent DNA helicase RecQ

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 0.00948478
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

GTGAATGTGG CGCAGGCGGA AGTGTTGAAT CTGGAGTCCG GGGCTAAACA GGTTTTACAA 
GAAACCTTTG GCTACCAACA GTTTCGCCCC GGCCAGGAAG AAATTATCGA CACTGTGCTT 
TCCGGCCGCG ATTGCCTCGT TGTCATGCCC ACTGGTGGCG GAAAATCCCT TTGCTATCAA 
ATCCCTGCCT TATTGCTAAA CGGCCTTACC GTGGTTGTTT CACCGCTGAT TTCGTTGATG 
AAAGATCAGG TGGATCAACT GCAAGCCAAC GGCGTGGCGG CGGTGTGCCT TAACTCGACG 
CAAACCCGCG AGCAGCAACT TGAAGTGATG ACAGGCTGTC GCACCGGGCA AATCCGCCTG 
CTTTATATCG CGCCGGAACG CCTGATGCTG GATAACTTTC TTGAGCATCT GGCGCACTGG 
AATCCGGTGT TATTAGCCGT TGATGAAGCG CACTGTATCT CCCAATGGGG TCACGATTTC 
CGCCCGGAAT ACGCTGCCCT CGGTCAGCTG CGTCAGCGTT TTCCGACGCT GCCGTTTATG 
GCGCTGACTG CCACAGCCGA TGACACCACG CGCCAGGATA TCGTGCGCCT GCTGGGGCTG 
AACGATCCGC TGATTCAAAT CAGCAGTTTT GATCGTCCGA ATATTCGCTA CATGCTGATG 
GAGAAGTTCA AACCGCTCGA TCAGTTGATG CGCTACGTGC AGGAACAGCG CGGTAAGTCC 
GGCATTATCT ACTGCAACAG CCGGGCGAAA GTAGAAGACA CCGCTGCGCG CCTGCAAAGC 
AAGGGTATTA GCGCGGCGGC CTATCATGCC GGGCTGGAAA ATAATGTCCG CGCCGACGTG 
CAGGAAAAAT TTCAGCGCGA TGACCTGCAA ATTGTGGTGG CGACCGTGGC GTTTGGCATG 
GGCATCAACA AGCCTAACGT CCGCTTCGTG GTCCACTTTG ATATTCCGCG CAATATCGAA 
TCCTATTATC AGGAAACCGG TCGCGCCGGG CGTGATGGCC TGCCCGCGGA AGCGATGCTG 
TTTTACGATC CGGCCGATAT GGCGTGGCTA CGCCGTTGTC TGGAAGAGAA GCCGCAGGGG 
CAATTGCAGG ATATCGAGCG CCATAAACTC AATGCGATGG GCGCGTTTGC CGAAGCGCAA 
ACTTGCCGTC GTCTGGTGCT GCTGAACTAC TTTGGCGAAG GGCGGCAGGA GCCGTGCGGG 
AACTGCGATA TCTGCCTCGA TCCGCCGAAA CAATACGATG GTTCAACCGA TGCTCAGATT 
GCCCTTTCCA CCATTGGTCG TGTGAATCAG CGGTTTGGGA TGGGCTATGT GGTGGAAGTT 
ATTCGCGGTG CTAATAATCA GCGTATCCGC GACTATGGTC ATGACAAACT GAAAGTCTAT 
GGCATGGGCC GTGATAAAAG CCATGAACAT TGGGTGAGCG TGATCCGCCA GCTGATTCAC 
CTCGGCCTGG TGACGCAAAA TATTGCCCAG CATTCTGCCC TACAACTGAC AGAGGCTGCG 
CGTCCGGTGC TGCGCGGCGA ATCCTCTTTG CAACTTGCCG TGCCGCGTAT CGTGGCGCTC 
AAACCGAAAG CGATGCAGAA ATCCTTCGGC GGCAACTATG ATCGCAAACT GTTCGCCAAA 
TTACGCAAAC TGCGTAAATC GATTGCCGAT GAAAGCAATG TCCCGCCGTA CGTGGTGTTT 
AACGACGCAA CCTTGATTGA GATGGCTGAA CAGATGCCGA TCACCGCCAG CGAAATGCTC 
AGCGTTAACG GCGTTGGGAT GCGCAAGCTG GAACGCTTTG GTAAACCGTT TATGGCGCTT 
ATCCGCGCGC ATGTCGATGG TGACGACGAA GAGTAG 

 

Protein sequence

MNVAQAEVLN LESGAKQVLQ ETFGYQQFRP GQEEIIDTVL SGRDCLVVMP TGGGKSLCYQ 
IPALLLNGLT VVVSPLISLM KDQVDQLQAN GVAAVCLNST QTREQQLEVM TGCRTGQIRL 
LYIAPERLML DNFLEHLAHW NPVLLAVDEA HCISQWGHDF RPEYAALGQL RQRFPTLPFM 
ALTATADDTT RQDIVRLLGL NDPLIQISSF DRPNIRYMLM EKFKPLDQLM RYVQEQRGKS 
GIIYCNSRAK VEDTAARLQS KGISAAAYHA GLENNVRADV QEKFQRDDLQ IVVATVAFGM 
GINKPNVRFV VHFDIPRNIE SYYQETGRAG RDGLPAEAML FYDPADMAWL RRCLEEKPQG 
QLQDIERHKL NAMGAFAEAQ TCRRLVLLNY FGEGRQEPCG NCDICLDPPK QYDGSTDAQI 
ALSTIGRVNQ RFGMGYVVEV IRGANNQRIR DYGHDKLKVY GMGRDKSHEH WVSVIRQLIH 
LGLVTQNIAQ HSALQLTEAA RPVLRGESSL QLAVPRIVAL KPKAMQKSFG GNYDRKLFAK 
LRKLRKSIAD ESNVPPYVVF NDATLIEMAE QMPITASEML SVNGVGMRKL ERFGKPFMAL 
IRAHVDGDDE E