| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4175 |
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| Symbol | dapF |
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| ID | 6146170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4274412 |
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| End bp | 4275236 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641618998 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001746126 |
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| Protein GI | 170683935 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.0210737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTTCT CGAAAATGCA TGGCCTTGGC AACGATTTTA TGGTCGTCGA CGCGGTAACG
CAGAATGTCT TTTTTTCACC GGAGCTGATT CGTCGCCTGG CTGATCGGCA CCTGGGGGTA
GGGTTTGACC AACTGCTGGT GGTTGAGCCG CCGTATGATC CTGAACTGGA TTTTCACTAT
CGCATTTTCA ATGCTGATGG CAGTGAAGTG GCGCAGTGCG GCAACGGAGC ACGCTGCTTT
GCCCGTTTTG TGCGTCTGAA AGGGCTGACC AATAAGCGCG ATATCCGCGT CAGCACCGCC
AACGGGCGGA TGGTTCTTAC CGTCACCGAT GATGATCTGG TCCGCGTAAA TATGGGCGAA
CCCAACTTCG AACCTTCTGC CGTGCCGTTT CGCGCTAACA AAGCGGAAAA GACCTATATT
ATGCGCGCCG CCGAGCAGAC AATCTTATGC GGCGTGGTGT CGATGGGAAA TCCGCATTGC
GTGATTCAGG TCGATGATGT CGATACCGCG GCGGTAGAAA CGCTTGGTCC TGTTCTGGAA
AGCCACGAAC GTTTCCCGGA GCGCGCCAAT ATCGGTTTTA TGCAAGTGGT TAAGCGCGAG
CATATTCGTT TACGCGTTTA TGAGCGTGGG GCAGGAGAAA CCCAGGCCTG CGGCAGCGGC
GCATGTGCGG CGGTGGCGGT AGGGATTCAG CAAGGTTTGC TGGCCGAAGA AGTACGCGTG
GAACTCCCCG GCGGTCGTCT TGATATCGCC TGGAAAGGTC CGGGTCACCC GTTATATATG
ACTGGCCCGG CGGTACATGT CTACGACGGA TTTATTCATC TATGA
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| Protein sequence | MQFSKMHGLG NDFMVVDAVT QNVFFSPELI RRLADRHLGV GFDQLLVVEP PYDPELDFHY
RIFNADGSEV AQCGNGARCF ARFVRLKGLT NKRDIRVSTA NGRMVLTVTD DDLVRVNMGE
PNFEPSAVPF RANKAEKTYI MRAAEQTILC GVVSMGNPHC VIQVDDVDTA AVETLGPVLE
SHERFPERAN IGFMQVVKRE HIRLRVYERG AGETQACGSG ACAAVAVGIQ QGLLAEEVRV
ELPGGRLDIA WKGPGHPLYM TGPAVHVYDG FIHL
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