| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4169 |
|---|
| Symbol | hemD |
|---|
| ID | 6146217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 4268731 |
|---|
| End bp | 4269471 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641618992 |
|---|
| Product | uroporphyrinogen-III synthase |
|---|
| Protein accession | YP_001746120 |
|---|
| Protein GI | 170683392 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.534441 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCC TGGTCACCCG CCCGTCTCCC GCTGGAGAAG AGTTAGTGAG CCGTCTGCGC
ACACTGGGGC AGGTGGCCTG GCATTTTCCG CTGATTGAGT TTTCTCCGGG TCGACAATTA
CCGCAACTTG CTGATCAACT GGCAGCGCTG GGGGAGAGCG ATCTGTTGTT TGCCCTCTCG
CAACACGCGG TTGCTTTTGC CCAATCACAG CTACATCAGC AAGATCGTAA ATGGCCCCGA
TTACCTGATT ATTTCGCCAT TGGACGCACC ACCGCACTGG CATTACATAC CGTAAGCGGA
CAGAAGATTC TCTACCCGCA GGATCGGGAA ATCAGCGAAG TCTTGCTACA ATTACCTGAA
TTACAAAATA TTGCGGGCAA ACGTGCGCTG ATATTACGTG GCAATGGCGG TCGTGAGCTA
ATTGGGGATT CCCTGACGGC GCGCGGTGCT GAGGTCACTT TTTGTGAATG TTATCAACGA
TGCGCAATCC ATTACGATGG TGCAGAAGAA GCGATGCGCT GGCAATCCCG CGAGGTGACG
ACGGTCGTTG TTACCAGCGG TGAAATGTTG CAGCAACTCT GGTCGCTGAT CCCACAATGG
TATCGTGAGC ACTGGTTACT ACGCTGTCGA CTATTGGTCG TCAGTGAGCG TTTGGCGAAA
CTCGCCCGGG AACTGGGCTG GCAAGACATT AAGGTCGCCG ATAACGCTGA CAACGATGCG
CTTTTACGGG CATTACAATA A
|
|---|
| Protein sequence | MSILVTRPSP AGEELVSRLR TLGQVAWHFP LIEFSPGRQL PQLADQLAAL GESDLLFALS
QHAVAFAQSQ LHQQDRKWPR LPDYFAIGRT TALALHTVSG QKILYPQDRE ISEVLLQLPE
LQNIAGKRAL ILRGNGGREL IGDSLTARGA EVTFCECYQR CAIHYDGAEE AMRWQSREVT
TVVVTSGEML QQLWSLIPQW YREHWLLRCR LLVVSERLAK LARELGWQDI KVADNADNDA
LLRALQ
|
|---|
| |