| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4146 |
|---|
| Symbol | rho |
|---|
| ID | 6144642 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 4246064 |
|---|
| End bp | 4247323 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641618969 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001746101 |
|---|
| Protein GI | 170683673 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTA CCGAATTAAA GAATACGCCG GTTTCTGAGC TGATCACTCT CGGCGAAAAT
ATGGGGCTGG AAAACCTGGC TCGTATGCGT AAGCAGGACA TTATTTTTGC CATCCTGAAG
CAGCACGCAA AGAGTGGCGA AGATATCTTT GGTGATGGCG TACTGGAGAT ATTGCAGGAT
GGATTTGGTT TCCTCCGTTC CGCAGACAGC TCCTACCTCG CCGGTCCTGA TGACATCTAC
GTTTCCCCTA GCCAAATCCG CCGTTTCAAC CTCCGCACTG GTGATACCAT CTCTGGTAAG
ATTCGCCCGC CGAAAGAAGG TGAACGCTAT TTTGCGCTGC TGAAAGTTAA CGAAGTTAAC
TTCGACAAAC CTGAAAACGC CCGCAACAAA ATCCTCTTTG AGAACTTAAC CCCGCTGCAC
GCAAACTCTC GTCTGCGTAT GGAACGTGGT AACGGTTCTA CGGAAGATTT AACCGCTCGC
GTACTGGATC TGGCATCACC TATCGGTCGT GGTCAGCGTG GTCTGATTGT GGCACCGCCG
AAAGCCGGTA AAACCATGCT GCTGCAGAAC ATTGCTCAGA GCATTGCTTA CAACCACCCG
GATTGCGTAC TGATGGTTCT GCTGATCGAC GAACGTCCGG AAGAAGTCAC CGAGATGCAG
CGTCTGGTTA AAGGTGAAGT TGTTGCTTCT ACCTTTGACG AACCCGCATC TCGCCACGTT
CAGGTTGCGG AAATGGTGAT CGAGAAGGCC AAACGCCTGG TTGAGCACAA GAAAGACGTT
ATCATTCTGC TCGACTCCAT CACTCGTCTG GCGCGCGCTT ACAACACCGT TGTTCCGGCG
TCAGGTAAAG TGTTGACCGG TGGTGTGGAT GCCAATGCTC TGCATCGTCC GAAACGCTTC
TTTGGTGCGG CGCGTAACGT GGAAGAGGGC GGCAGCCTGA CCATCATCGC TACCGCGCTT
ATCGATACCG GTTCCAAGAT GGACGAAGTT ATCTACGAAG AGTTTAAAGG TACAGGCAAC
ATGGAACTGC ACCTCTCTCG TAAGATCGCT GAAAAACGCG TCTTCCCGGC TATCGACTAC
AACCGTTCCG GTACCCGTAA AGAAGAGCTG CTCACGACTC AGGAAGAACT GCAGAAAATG
TGGATCCTGC GCAAAATCAT TCACCCGATG GGCGAAATCG ATGCAATGGA ATTCCTCATT
AATAAACTGG CAATGACCAA GACCAATGAC GATTTCTTCG AAATGATGAA ACGCTCATAA
|
|---|
| Protein sequence | MNLTELKNTP VSELITLGEN MGLENLARMR KQDIIFAILK QHAKSGEDIF GDGVLEILQD
GFGFLRSADS SYLAGPDDIY VSPSQIRRFN LRTGDTISGK IRPPKEGERY FALLKVNEVN
FDKPENARNK ILFENLTPLH ANSRLRMERG NGSTEDLTAR VLDLASPIGR GQRGLIVAPP
KAGKTMLLQN IAQSIAYNHP DCVLMVLLID ERPEEVTEMQ RLVKGEVVAS TFDEPASRHV
QVAEMVIEKA KRLVEHKKDV IILLDSITRL ARAYNTVVPA SGKVLTGGVD ANALHRPKRF
FGAARNVEEG GSLTIIATAL IDTGSKMDEV IYEEFKGTGN MELHLSRKIA EKRVFPAIDY
NRSGTRKEEL LTTQEELQKM WILRKIIHPM GEIDAMEFLI NKLAMTKTND DFFEMMKRS
|
|---|
| |