| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4100 |
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| Symbol | atpD |
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| ID | 6147121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4195792 |
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| End bp | 4197174 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641618924 |
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| Product | F0F1 ATP synthase subunit beta |
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| Protein accession | YP_001746062 |
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| Protein GI | 170681189 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
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| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.740687 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.359635 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACTG GAAAGATTGT CCAGGTAATC GGCGCCGTAG TTGACGTCGA ATTCCCTCAG
GATGCCGTAC CGCGCGTGTA CGATGCTCTT GAGGTGCAAA ATGGTAATGA GCGTCTGGTG
CTGGAAGTTC AGCAGCAGCT CGGCGGCGGT ATCGTGCGTA CCATCGCAAT GGGTTCCTCC
GACGGTCTGC GTCGCGGTCT GGATGTAAAA GACCTCGAAC ACCCGATCGA AGTCCCGGTA
GGTAAAGCGA CTCTGGGCCG TATCATGAAC GTACTGGGTG AACCGGTCGA CATGAAAGGC
GAGATCGGTG AAGAAGAGCG TTGGGCGATT CACCGCGCAG CACCTTCCTA CGAAGAGCTG
TCAAACTCTC AGGAACTGCT GGAAACCGGT ATCAAAGTTA TCGACCTGAT GTGTCCGTTC
GCTAAGGGCG GTAAAGTTGG TCTGTTCGGT GGTGCGGGTG TAGGTAAAAC CGTAAACATG
ATGGAGCTTA TTCGTAACAT CGCGATCGAG CACTCCGGAT ACTCTGTGTT TGCGGGCGTA
GGTGAACGTA CTCGTGAGGG TAACGACTTC TACCACGAAA TGACCGACTC CAACGTTATC
GACAAAGTAT CCCTGGTGTA TGGCCAGATG AACGAGCCGC CGGGAAACCG TCTGCGCGTT
GCTCTGACCG GTCTGACCAT GGCTGAGAAA TTCCGTGACG AAGGTCGTGA CGTTCTGCTG
TTCGTTGACA ACATCTATCG TTACACCCTG GCCGGTACGG AAGTATCCGC ACTGCTGGGC
CGTATGCCTT CAGCGGTAGG TTATCAGCCG ACCCTGGCGG AAGAGATGGG CGTTCTGCAG
GAACGTATCA CCTCCACCAA AACTGGTTCT ATCACCTCCG TACAGGCGGT ATACGTACCT
GCGGATGACT TGACTGACCC GTCTCCGGCA ACCACCTTTG CGCACCTTGA CGCAACCGTG
GTACTGAGCC GTCAGATCGC GTCTCTGGGT ATCTACCCGG CCGTTGACCC GCTGGACTCC
ACCAGCCGTC AGCTGGACCC GCTGGTGGTT GGTCAGGAAC ACTACGACAC CGCGCGTGGC
GTTCAGTCCA TCCTGCAACG TTATCAGGAA CTGAAAGACA TCATCGCCAT CCTGGGTATG
GATGAACTGT CTGAAGAAGA CAAACTGGTG GTAGCGCGTG CTCGTAAGAT CCAGCGCTTC
CTGTCCCAGC CGTTCTTCGT GGCAGAAGTA TTCACCGGTT CTCCGGGTAA ATACGTCTCC
CTGAAAGACA CCATCCGTGG CTTTAAAGGC ATCATGGAAG GCGAATACGA TCACCTGCCG
GAGCAGGCGT TCTACATGGT CGGTTCCATC GAAGAAGCTG TGGAAAAAGC CAAAAAACTT
TAA
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| Protein sequence | MATGKIVQVI GAVVDVEFPQ DAVPRVYDAL EVQNGNERLV LEVQQQLGGG IVRTIAMGSS
DGLRRGLDVK DLEHPIEVPV GKATLGRIMN VLGEPVDMKG EIGEEERWAI HRAAPSYEEL
SNSQELLETG IKVIDLMCPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV
GERTREGNDF YHEMTDSNVI DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL
FVDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP
ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDTARG
VQSILQRYQE LKDIIAILGM DELSEEDKLV VARARKIQRF LSQPFFVAEV FTGSPGKYVS
LKDTIRGFKG IMEGEYDHLP EQAFYMVGSI EEAVEKAKKL
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