| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_4096 |
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| Symbol | lpfA |
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| ID | 6145389 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4190762 |
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| End bp | 4191334 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641618920 |
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| Product | long polar fimbrial operon protein LpfA |
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| Protein accession | YP_001746058 |
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| Protein GI | 170680528 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.161781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGCGTA ATATTATAGG CGGTGCATTC ACTCTGGCAT CTTTAATGCT GGCCGGACAT
GCACTGGCAG AAGATGGTGT TGTTCACTTC GTCGGTGAAA TTGTCGACAC TACTTGTGAA
GTTACCTCCG ATACAGCCGA TCAAACCGTC CCACTGGGTA AAGTCAGTAA AAATGCATTT
TCAGGTGTAG GTAGTCTGGC GTCACCACAG CAGTTCAGTA TTAAACTTGA AAAGTGCCCG
GCAACCTACA CTCAGGCAGC CGTTCGTTTT GATGGTACAG AAGCGCCTGG CGGCGACGGC
GACCTGAAAG TGGGTACGCC GCTTACAGCG GGCAACCCTG GCGATTTTAC CGGTACAGGA
CAAGCGATTG CGGCAACGGG TGTCGGTATT CGTATTTTTA ACCAGTCAGA TAACTCGCAG
GTTAAACTTT ATAACGATTC TGCCTATACC GCTATCGACG CGGAAGGCAA GGCTGAAATG
AAGTTTATTG CACGCTATGT GGCAACCAAT GCAACCGTAA CGGCGGGTAC GGCGAACGCC
GATTCACAAT TTACTGTCGA ATATAAGAAA TAA
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| Protein sequence | MKRNIIGGAF TLASLMLAGH ALAEDGVVHF VGEIVDTTCE VTSDTADQTV PLGKVSKNAF
SGVGSLASPQ QFSIKLEKCP ATYTQAAVRF DGTEAPGGDG DLKVGTPLTA GNPGDFTGTG
QAIAATGVGI RIFNQSDNSQ VKLYNDSAYT AIDAEGKAEM KFIARYVATN ATVTAGTANA
DSQFTVEYKK
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