Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_4072 |
Symbol | |
ID | 6144017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 4161744 |
End bp | 4163390 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641618897 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_001746035 |
Protein GI | 170680368 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.131417 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTCGC AACGCAATCT TTTAGTCATC GCTTTGCTGT TCGTGTCTTT CATGATCTGG CAAGCCTGGG AGCAGGATAA AAACCCGCAA CCTCAGGCCC AACAGACCAC GCAGACAACG ACCACCGCAG CGGGTAGCGC CGCCGACCAG GGCGTACCGG CCAGTGGCCA GGGGAAACTG ATCTCGGTTA AGACCGACGT GCTTGATCTG ACCATCAACA CCCGTGGTGG TGATGTTGAG CAAGCTCTGC TGCCTGCTTA CCCGAAAGAG CTGAACTCTA CCCAGCCGTT CCAGTTGCTG GAAACTTCAC CGCAGTTTAT TTATCAGGCA CAGAGCGGTC TGACCGGTCG TGATGGCCCG GATAACCCGG CTAACGGCCC GCGTCCGCTG TATAACGTTG AAAAGGACGC TTATGTGCTG GCTGAAGGTC AAAACGAACT GCAGGTGCCG ATGACGTATA CCGACGCGGC AGGCAACACG TTTACCAAAA CGTTTGTCCT GAAACGTGGT GATTACGCTG TCAACGTCAA CTACAACGTG CAGAACGCTG GCGAGAAACC GCTGGAAATC TCCACCTTTG GTCAGTTGAA GCAATCCATC ACTCTGCCAC CGCATCTCGA TACCGGAAGC AGCAACTTCG CACTGCACAC CTTCCGTGGC GCGGCGTACT CCACGCCTGA CGAGAAGTAC GAGAAATACA AGTTCGATAC CATTGCCGAT AACGAAAACC TGAACATCTC TTCGAAAGGT GGTTGGGTGG CGATGCTGCA ACAGTATTTC GCGACGGCGT GGATCCCGCA TAACGACGGT ACCAACAACT TCTATACCGC TAATCTGGGT AACGGCATCG CCGCTATCGG CTATAAATCT CAGCCGGTAC TGGTTCAGCC TGGTCAGACT GGCGCGATGA ACAGCACCCT GTGGGTTGGC CCGGAAATCC AGGACAAAAT GGCAGCTGTT GCTCCGCACC TGGATCTGAC CGTTGATTAC GGTTGGTTGT GGTTCATTTC TCAGCCGCTG TTCAAACTGC TGAAATGGAT CCATAGCTTT GTGGGTAACT GGGGCTTCTC CATTATCATC ATCACCTTTA TCGTTCGTGG CATCATGTAC CCGCTGACCA AAGCGCAGTA CACCTCCATG GCGAAGATGC GTATGCTGCA GCCGAAGATT CAGGCTATGC GTGAGCGTCT GGGCGATGAC AAACAGCGTA TCAGTCAGGA AATGATGGCG CTGTACAAAG CTGAGAAGGT TAACCCGCTG GGCGGCTGCT TCCCGCTGCT GATCCAGATG CCAATCTTCC TGGCGTTGTA CTACATGCTG ATGGGTTCCG TTGAACTGCG TCAGGCACCG TTTGCACTGT GGATCCACGA CCTGTCTGCA CAGGACCCGT ACTACATCCT GCCGATCCTG ATGGGCGTAA CGATGTTCTT CATTCAGAAG ATGTCGCCGA CCACCGTGAC CGACCCGATG CAGCAGAAGA TCATGACCTT TATGCCGGTC ATCTTCACCG TGTTCTTCCT GTGGTTCCCG TCAGGTCTGG TGCTGTACTA TATCGTCAGC AACCTGGTAA CCATTATTCA GCAGCAGCTG ATTTACCGTG GTCTGGAAAA ACGTGGCCTG CATAGCCGCG AGAAGAAAAA ATCCTGA
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Protein sequence | MDSQRNLLVI ALLFVSFMIW QAWEQDKNPQ PQAQQTTQTT TTAAGSAADQ GVPASGQGKL ISVKTDVLDL TINTRGGDVE QALLPAYPKE LNSTQPFQLL ETSPQFIYQA QSGLTGRDGP DNPANGPRPL YNVEKDAYVL AEGQNELQVP MTYTDAAGNT FTKTFVLKRG DYAVNVNYNV QNAGEKPLEI STFGQLKQSI TLPPHLDTGS SNFALHTFRG AAYSTPDEKY EKYKFDTIAD NENLNISSKG GWVAMLQQYF ATAWIPHNDG TNNFYTANLG NGIAAIGYKS QPVLVQPGQT GAMNSTLWVG PEIQDKMAAV APHLDLTVDY GWLWFISQPL FKLLKWIHSF VGNWGFSIII ITFIVRGIMY PLTKAQYTSM AKMRMLQPKI QAMRERLGDD KQRISQEMMA LYKAEKVNPL GGCFPLLIQM PIFLALYYML MGSVELRQAP FALWIHDLSA QDPYYILPIL MGVTMFFIQK MSPTTVTDPM QQKIMTFMPV IFTVFFLWFP SGLVLYYIVS NLVTIIQQQL IYRGLEKRGL HSREKKKS
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