Gene EcSMS35_4060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_4060 
SymboldgoR_1 
ID6146357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp4151236 
End bp4151925 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content55% 
IMG OID641618885 
Productgalactonate operon transcriptional repressor 
Protein accessionYP_001746023 
Protein GI170682667 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCTCA ATAAAACCGA TCGCATTGTC ATTACGCTGG GTAAACAGAT CGTTCACGGC 
AAATACGTAC CAGGCTCTCC ACTTCCGGCT GAGGCGGAGC TCTGTGAAGA GTTTGCAACC
TCGCGCAACA TCATCCGTGA GGTGTTCCGT TCGCTGATGG CGAAGCGGCT GATTGAAATG
AAACGTTATC GCGGGGCGTT TGTGGCACCG CGTAATCAGT GGAATTACCT CGATACTGAC
GTGCTGCAAT GGGTGCTGGA AAACGACTAC GACCCACGGC TTATCAGTGC AATGAGCGAA
GTGCGAAATC TGGTGGAACC GGCGATTGCC CGTTGGGCGG CAGAGCGCGC GACTTCCAGC
GATCTGGCGC AGATTGAATC AGCGCTGAAC GAGATGATTG CCAACAATCA GGACCGCGAA
GCGTTTAACG AAGCGGATAT TCGCTACCAC GAGGCGGTGC TGCAGTCGGT GCATAACCCG
GTGTTACAGC AACTTAGCAT TGCGATCAGT TCGCTGCAGC GGGCGGTTTT TGAACGAACC
TGGATGGGCG ATGAGGCCAA CATGCCGCAA ACGCTCCAGG AACATAAGGC GCTGTTTGAT
GCGATACGGC ATCAGGACGG CGATGCGGCA GAGCAGGCGG CGCTTACCAT GATCGCCAGC
TCGACACGAA GGTTAAAGGA AATCACATGA
 
Protein sequence
MTLNKTDRIV ITLGKQIVHG KYVPGSPLPA EAELCEEFAT SRNIIREVFR SLMAKRLIEM 
KRYRGAFVAP RNQWNYLDTD VLQWVLENDY DPRLISAMSE VRNLVEPAIA RWAAERATSS
DLAQIESALN EMIANNQDRE AFNEADIRYH EAVLQSVHNP VLQQLSIAIS SLQRAVFERT
WMGDEANMPQ TLQEHKALFD AIRHQDGDAA EQAALTMIAS STRRLKEIT