| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3965 |
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| Symbol | rfaP |
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| ID | 6145467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4043179 |
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| End bp | 4043976 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641618791 |
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| Product | lipopolysaccharide core biosynthesis protein RfaP |
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| Protein accession | YP_001745930 |
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| Protein GI | 170681792 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0509856 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGTTGAAC TTAAAGAGCC GTTTGCCACG TTATGGCGCG GTAAAGATCC TTTTGAGGAA
GTTAAAACCT TGCAGGGTGA GGTATTTCGT GAACTGGAAA CTCGCCGCAC TCTGCGCTTT
GAAATGGCGG GCAAAAGCTA TTTTCTCAAA TGGCATCGCG GCACGACCCT GAAAGAGATA
ATCAAAAATT TACTCTCATT GCGGATGCCA GTATTAGGCG CAGACCGCGA ATGGAATGCG
ATTCATCGAC TGCGGGATGT CGGCGTTGAT ACTATGTATG GGGTGGCATT CGGCGAAAAA
GGCATTAATC CGCTGACCAG AACCTCGTTT ATTATTACCG AAGATCTGAC ACCAACCATC
AGTCTGGAAG ATTACTGTGC TGACTGGGCG ACCAACCCAC CAGATGTTCG CGTAAAGCGT
ATGCTTATTA AGCGTGTCGC GACGATGGTG CGCGATATGC ATGCTGCGGG CATTAACCAC
CGTGACTGTT ATATCTGTCA TTTCCTGCTG CACTTGCCTT TTTCCGGTAA GGAAGAGGAG
TTAAAAATTT CAGTAATTGA CCTGCACCGG GCGCAGCTTC GCACGCGCGT TCCATGTCGT
TGGCGCGATA AAGATCTTAT TGGACTTTAT TTTTCTTCGA TGAATATTGG CCTGACTCAA
CGGGATATCT GGCGGTTTAT GAAAGTGTAT TTTGTCGCCC CGCTTAAAGA CATTCTCAAG
CAGGAACAAG GGCTGCTGTC GCAAGCAGAA GAAAAAGCCA CAAAAATCAG GGAAAGAACG
ATTCGAAAAT CGTTGTAA
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| Protein sequence | MVELKEPFAT LWRGKDPFEE VKTLQGEVFR ELETRRTLRF EMAGKSYFLK WHRGTTLKEI
IKNLLSLRMP VLGADREWNA IHRLRDVGVD TMYGVAFGEK GINPLTRTSF IITEDLTPTI
SLEDYCADWA TNPPDVRVKR MLIKRVATMV RDMHAAGINH RDCYICHFLL HLPFSGKEEE
LKISVIDLHR AQLRTRVPCR WRDKDLIGLY FSSMNIGLTQ RDIWRFMKVY FVAPLKDILK
QEQGLLSQAE EKATKIRERT IRKSL
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