| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3962 |
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| Symbol | rfaY |
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| ID | 6146378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 4040433 |
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| End bp | 4041125 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 641618788 |
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| Product | lipopolysaccharide core biosynthesis protein |
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| Protein accession | YP_001745927 |
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| Protein GI | 170680583 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0815818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTACAA GTATACGTTA CCGCGGCTTC TCATTTTATT ACAAAAATAA TGATAATAAA
TATAAAGAAA TCTTTGATGA AATACTGGCC TATAATTTCA AAACAGTAAA AGTATTACGT
AATATTGATG ATACCAAAGT ATCGTTGATT GATACGAAAT ATGGTCGCTA TGTTTTTAAA
GTCTTTGCTC CGAAAACGAA AAGGAATGAA CGTTTTTTAA AATCTTTTGT AAAAGGTGAC
TACTATCAGA ATTTGATCGT TGAAACCGAT CGTGTCAGAA GTGCAGGTCT TACTTTTCCT
AATGATTTTT ATTTTCTGGC TGAGCGTAAA ATTTTCAATT ATGCCAGTGT TTTTATCATG
CTTATCGAGT ATGTCGAGGG CGTAGAGCTC AATGATATGC CGATTATTCC AGAAGATGTT
AAAGCAGAAA TTAAGGCTTC AATGGAAAAA TTGCATGCCT TAAATATGCT ATCGGGCGAC
CCACACCGGG GTAACTTTAT CGTTAGTAAA GATGGTGTCA GGATAATTGA CCTATCCGGT
AAAAGCTGTA CGGCAGAGCG TAAAGCTCGT GATCGTCTGG CCATGGAACG TCACCTGGGT
ATTGCCAACG AAATAAAAGA TTATGGCTAC TATTCAGTAA TCTACAGAAC CAAACTACGC
AAATTTATTA AAAAATTAAA AGGCAAAGCG TAA
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| Protein sequence | MITSIRYRGF SFYYKNNDNK YKEIFDEILA YNFKTVKVLR NIDDTKVSLI DTKYGRYVFK
VFAPKTKRNE RFLKSFVKGD YYQNLIVETD RVRSAGLTFP NDFYFLAERK IFNYASVFIM
LIEYVEGVEL NDMPIIPEDV KAEIKASMEK LHALNMLSGD PHRGNFIVSK DGVRIIDLSG
KSCTAERKAR DRLAMERHLG IANEIKDYGY YSVIYRTKLR KFIKKLKGKA
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