| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3958 |
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| Symbol | rfaC |
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| ID | 6143135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4035974 |
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| End bp | 4036945 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618784 |
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| Product | ADP-heptose:LPS heptosyl transferase I |
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| Protein accession | YP_001745923 |
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| Protein GI | 170682077 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0859] ADP-heptose:LPS heptosyltransferase |
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| TIGRFAM ID | [TIGR02193] lipopolysaccharide heptosyltransferase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0259947 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGGGTTC TGATCGTTAA AACATCGTCG ATGGGCGATG TTCTCCATAC GCTGCCCGCA
CTCACTGATG CCCAGCAGGC AATCCCAGGG ATTAAGTTTG ACTGGGTGGT GGAAGAAGGG
TTCACACAGA TTCCTTCCTG GCACGCCGCC GTTGAGCGAG TTATTCCTGT GGCAATACGT
CGCTGGCGTA AAGCCTGGTT CTCGGCCCCC ATAAAAGCTG AACGCAAAGC GTTTCGTGAA
ACGCTACAAG CAGAGAATTA TGACGCAGTT ATCGACGCTC AGGGGCTGGT AAAAAGCGCA
GCGCTGGTGA CGCGTCTGGC GCATGGCGTA AAGCATGGAA TGGACTGGCA AACCGCTCGC
GAACCGTTAG CCAGCCTGTT TTACAATCGT AAACATCATA TTGCAAAACA GCAGCACGCC
GTAGAACGCA CCCGCGAACT GTTTGCCAAA AGTCTGGGCT ATAGCAAACC ACAAACCCAG
GGCGATTATG CTATCGCACA GCATTTCCTG ACGAACCTGC CTACAGATGC TGGCGAATAT
GCCGTATTTC TTCATGCAAC AACCCGAGAT GATAAACACT GGCCGGAAGA ACACTGGCGA
GAATTGATTG GTTTACTGGC TGATTCAGGA ATACGGATTA AACTTCCGTG GGGCGCGCCG
CATGAGGAAG AACGGGCGAA ACGACTGGCG GAAGGATTTG CTTATGTTGA AGTATTGCCG
AAGATGAGTC TGGAAGGCGT TGCCCGCGTA CTGGCTGGGG CTAAATTTGT AGTGTCGGTG
GATACGGGGT TAAGCCATTT AACGGCGGCA CTGGATAGAC CCAATATCAC GGTTTATGGA
CCTACCGATC CGGGACTAAT TGGTGGGTAT GGGAAGAATC AGATGGTTTG TAGGGCTCCG
GGGAATGAGT TGTCTCAATT GACAGCAAAT GCTGTTAAGC GGTTCATTGA AGAAAACGCT
GCCATGATTT AA
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| Protein sequence | MRVLIVKTSS MGDVLHTLPA LTDAQQAIPG IKFDWVVEEG FTQIPSWHAA VERVIPVAIR
RWRKAWFSAP IKAERKAFRE TLQAENYDAV IDAQGLVKSA ALVTRLAHGV KHGMDWQTAR
EPLASLFYNR KHHIAKQQHA VERTRELFAK SLGYSKPQTQ GDYAIAQHFL TNLPTDAGEY
AVFLHATTRD DKHWPEEHWR ELIGLLADSG IRIKLPWGAP HEEERAKRLA EGFAYVEVLP
KMSLEGVARV LAGAKFVVSV DTGLSHLTAA LDRPNITVYG PTDPGLIGGY GKNQMVCRAP
GNELSQLTAN AVKRFIEENA AMI
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