| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3956 |
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| Symbol | rfaD |
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| ID | 6147033 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 4033982 |
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| End bp | 4034914 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618782 |
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| Product | ADP-L-glycero-D-mannoheptose-6-epimerase |
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| Protein accession | YP_001745921 |
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| Protein GI | 170683119 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000259209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCATCG TTACCGGCGG CGCGGGCTTT ATCGGCAGCA ACATCGTTAA AGCCCTGAAT
GACAAAGGCA TCACCGATAT TCTGGTGGTG GATAACCTGA AAGACGGCAC CAAGTTTGTG
AACCTGGTGG ATCTGGATAT CGCGGACTAT ATGGATAAGG AAGACTTCCT GATCCAGATT
ATGGCTGGCG AAGAGTTCGG CGATGTCGAA GCGATTTTCC ACGAAGGCGC GTGCTCTTCC
ACCACCGAGT GGGACGGCAA GTATATGATG GATAACAACT ATCAATACTC CAAAGAGCTG
CTGCACTACT GCCTGGAGCG CGAAATCCCG TTGCTGTACG CTTCTTCTGC AGCCACTTAC
GGCGGACGCA CTTCCGACTT TATTGAATCC CGCGAGTACG AAAAACCACT TAACGTCTAC
GGTTATTCGA AGTTCCTGTT TGATGAATAT GTTCGCCAAA TCCTGCCGGA AGCCAACTCG
CAGATTGTTG GCTTCCGTTA TTTCAACGTT TATGGACCGC GTGAAGGCCA TAAAGGCAGC
ATGGCGAGCG TCGCTTTCCA TCTCAACACC CAGCTTAATA ACGGTGAATC ACCGAAGCTG
TTCGAAGGTA GCGAGAACTT CAAACGTGAC TTCGTCTATG TGGGCGATGT GGCAGATGTA
AACCTGTGGT TCCTGGAAAA TGGCGTTTCC GGCATCTTCA ACCTCGGCAC CGGTCGTGCG
GAATCCTTCC AGGCAGTAGC AGATGCTACA CTTGCTTATC ACAAGAAAGG CCAAATCGAA
TACATTCCGT TCCCGGATAA ACTGAAAGGC CGCTACCAGG CGTTCACGCA GGCAGATCTG
ACGAATCTGC GCGCGGCGGG TTACGATAAA CCGTTCAAAA CCGTTGCCGA AGGCGTAACG
GAATACATGG CCTGGCTGAA TCGTGACGCA TAA
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| Protein sequence | MIIVTGGAGF IGSNIVKALN DKGITDILVV DNLKDGTKFV NLVDLDIADY MDKEDFLIQI
MAGEEFGDVE AIFHEGACSS TTEWDGKYMM DNNYQYSKEL LHYCLEREIP LLYASSAATY
GGRTSDFIES REYEKPLNVY GYSKFLFDEY VRQILPEANS QIVGFRYFNV YGPREGHKGS
MASVAFHLNT QLNNGESPKL FEGSENFKRD FVYVGDVADV NLWFLENGVS GIFNLGTGRA
ESFQAVADAT LAYHKKGQIE YIPFPDKLKG RYQAFTQADL TNLRAAGYDK PFKTVAEGVT
EYMAWLNRDA
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