| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3902 |
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| Symbol | |
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| ID | 6146397 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3972165 |
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| End bp | 3973151 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641618728 |
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| Product | TRAP transporter solute receptor DctP family protein |
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| Protein accession | YP_001745867 |
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| Protein GI | 170679692 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAC GCTCTGTAAC CTACGCATTA TTCATTGCTG GCCTGGCTGC ATTTAGTACA
TCTTCAATGG CGGCGCAATC TTTACGTTTC GGTTATGAAA CCTCACAAAC CGACTCGCAA
CATATTGCGG CGAAAAAATT CAATGATTTA TTGCAGGAGA GAACCAAAGG CGAGCTGAAA
TTAAAACTGT TCCCGGACAG CACTCTCGGT AACGCGCAGG CGATGATCAG CGGCGTACGT
GGCGGCACCA TCGATATGGA AATGTCCGGC TCGAATAACT TTGCCGGGTT ATCACCAGTG
ATGAACTTGC TTGATGTCCC TTTCCTGTTC CGCGATACCG CTCACGCGCA TAAAACGCTC
GACGGCAAAG TCGGTGATGA TCTGAAAGCC TCACTTGAAG GTAAAGGACT GAAAGTACTG
GCCTACTGGG AAAACGGCTG GCGCGATGTC ACCAACTCGC GCGCACCGGT TAAAACCCCC
GCCGACCTGA AAGGGCTGAA AATCCGCACC AACAATAGTC CGATGAATAT CGCAGCATTC
AAAGTCTTTG GCGCTAACCC GATCCCGATG CCGTTTGCCG AAGTCTATAC CGGGCTGGAA
ACGCGCACTA TCGACGCTCA GGAACACCCG ATCAACGTCG TCTGGTCAGC AAAATTTTAT
GAAGTACAGA AGTACCTTTC TCTGACGCAC CACGCCTATT CGCCACTTCT GGTGGTGATC
AACAAAGCGA AGTTTGACGG CTTAACCCCG GAGTTCCAGC AAGCGCTAAT TTCATCTGCG
CAGGAAGCGG GTAACTACCA GCGCAAACTG GTTGCCGAAG ATCAGCAAAA AATCATCGAC
GGCATGAAAG AAGCGGGCGT GGAAGTCATC ACCGATCTCG ACCGCAAAGC CTTTAGCGAC
GCACTGGGGA ATCAGGTTCG CGACATGTTT GTTAAAGATG TGCCGCAGGG AGCTGATCTG
CTGAAAGCCG TGGATGAGGT GCAATAA
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| Protein sequence | MKLRSVTYAL FIAGLAAFST SSMAAQSLRF GYETSQTDSQ HIAAKKFNDL LQERTKGELK
LKLFPDSTLG NAQAMISGVR GGTIDMEMSG SNNFAGLSPV MNLLDVPFLF RDTAHAHKTL
DGKVGDDLKA SLEGKGLKVL AYWENGWRDV TNSRAPVKTP ADLKGLKIRT NNSPMNIAAF
KVFGANPIPM PFAEVYTGLE TRTIDAQEHP INVVWSAKFY EVQKYLSLTH HAYSPLLVVI
NKAKFDGLTP EFQQALISSA QEAGNYQRKL VAEDQQKIID GMKEAGVEVI TDLDRKAFSD
ALGNQVRDMF VKDVPQGADL LKAVDEVQ
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