Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3901 |
Symbol | |
ID | 6146605 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3970875 |
End bp | 3972152 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641618727 |
Product | TRAP transporter, DctM subunit |
Protein accession | YP_001745866 |
Protein GI | 170682198 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGTGC TGATTTTTCT GGGCTGTCTG TTGGGTGGTA TTGCTATCGG TTTGCCTATT GCCTGGGCAC TGTTGTTGTG CGGGGCGGCG TTAATGTTCT GGCTGGGCAT GTTTGATGTC CAGATCATGG CACAAACGCT GGTGAACGGA GCCGACAGCT TCTCCCTGCT GGCGATTCCG TTCTTTGTGC TGGCGGGTGA AATCATGAAT GCGGGCGGCT TGTCAAAACG CATTGTTGAC CTGCCGATGA AACTGGTGGG GCATAAACCA GGCGGGCTGG GCTACGTCGG CGTGCTGGCG GCTATGATTA TGGCAAGCCT TTCTGGTTCT GCCGTTGCGG ATACCGCCGC CGTTGCCGCT CTACTGGTGC CGATGATGCG CAGCGCCAAC TACCCGGTCA ACCGGGCGGC GGGGCTGATT GCCTCTGGCG GCATTATCGC GCCAATTATT CCCCCTTCCA TTCCGTTTAT TATTTTCGGC GTTTCCAGCG GATTATCCAT CAGTAAGCTG TTTATGGCGG GCATTGCCCC TGGCATGATG ATGGGCGCAA CGCTGATGCT TACCTGGTGG TGGCAGGCCA GTCGCCTTAA TTTACCCCGC CAGCAAAAAG CAACGATGCA GGAAATCTGG CACTCTTTTG TCTCCGGTAT CTGGGCGCTG TTTCTTCCAG TCATCATTAT TGGCGGGTTT CGCTCCGGTC TGTTTACCCC TACCGAAGCC GGGGCCGTTG CTGCTTTCTA TGCGCTGTTT GTCGCCACAG TTATTTACCG TGAAATGACC TTCGCCACAC TTTGGCATGT ACTCATTGGC GCGGCGAAAA CCACCTCAGT GGTAATGTTT CTGGTGGCCT CGGCACAAGT TTCTGCCTGG CTGATTACCA TTGCTGAATT GCCGATGATG GTTTCTGATT TACTGCAACC GTTGGTCGAT TCACCGCGTC TGCTGTTTAT CGTTATTATG CTGGCTATCC TGATTGTCGG CATGGTCATG GATTTAACGC CGACGGTGTT AATTCTTACT CCGGTATTAA TGCCTTTAGT TAAAGAGGCA GGAATCGATC CGATTTATTT CGGTGTCATG TTTATCATTA ACTGCTCAAT CGGCTTAATT ACACCGCCTA TCGGTAATGT GCTTAACGTT ATTTCAGGGG TGGCAAAACT CAAATTCGAT GATGCAGTCA GAGGCGTTTT CCCTTACGTC CTGGTTTTAT ATTCATTATT AGTCGTATTT GTTTTTATTC CCGATCTCAT CATCCTCCCT TTGAAATGGA TTAATTAA
|
Protein sequence | MAVLIFLGCL LGGIAIGLPI AWALLLCGAA LMFWLGMFDV QIMAQTLVNG ADSFSLLAIP FFVLAGEIMN AGGLSKRIVD LPMKLVGHKP GGLGYVGVLA AMIMASLSGS AVADTAAVAA LLVPMMRSAN YPVNRAAGLI ASGGIIAPII PPSIPFIIFG VSSGLSISKL FMAGIAPGMM MGATLMLTWW WQASRLNLPR QQKATMQEIW HSFVSGIWAL FLPVIIIGGF RSGLFTPTEA GAVAAFYALF VATVIYREMT FATLWHVLIG AAKTTSVVMF LVASAQVSAW LITIAELPMM VSDLLQPLVD SPRLLFIVIM LAILIVGMVM DLTPTVLILT PVLMPLVKEA GIDPIYFGVM FIINCSIGLI TPPIGNVLNV ISGVAKLKFD DAVRGVFPYV LVLYSLLVVF VFIPDLIILP LKWIN
|
| |