| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3889 |
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| Symbol | xylF |
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| ID | 6145527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 3957289 |
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| End bp | 3958281 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641618715 |
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| Product | D-xylose transporter subunit XylF |
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| Protein accession | YP_001745854 |
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| Protein GI | 170682540 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4213] ABC-type xylose transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02634] D-xylose ABC transporter, substrate-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 74 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAA AGAACATTCT ACTCACCCTT TGCACCTCAC TTCTGCTTAC CAACGTTGCG
GCTCACGCCA AAGAAGTCAA AATAGGTATG GCGATTGATG ATCTCCGTCT TGAACGCTGG
CAAAAAGATC GAGATATTTT TGTGAAAAAG GCAGAATCTC TCGGCGCGAA AGTATTTGTA
CAGTCTGCAA ATGGCAATGA AGAAACACAA ATGTCGCAGA TTGAAAACAT GATTAACCGG
GGCGTCGATG TTCTTGTTAT TATTCCGTAT AACGGTCAGG TATTAAGTAA CGTTGTAAAA
GAAGCCAAAC AAGAAGGTAT TAAAGTATTA GCTTACGACC GTATGATTAA CGATGCGGAT
ATCGATTTTT ATATTTCTTT CGATAACGAA AAAGTCGGCG AACTGCAGGC AAAAGCCCTG
GTCGATATTG TTCCGCAAGG TAATTACTTC CTGATGGGCG GCTCGCCGGT AGATAACAAC
GCCAAGCTGT TCCGCGCCGG GCAAATGAAA GTATTAAAAC CTTATGTTGA TTCCGGAAAA
ATTAAAGTCG TTGGTGACCA ATGGGTTGAT GGCTGGTTAC CGGAAAACGC ATTGAAAATT
ATGGAAAACG CGCTAACCGC CAATAATAAC AAAATTGATG CTGTAGTTGC CTCAAACGAT
GCCACCGCAG GAGGAGCAAT TCAGGCATTA AGCGCGCAAG GTTTATCAGG GAAAGTAGCA
ATTTCCGGCC AGGATGCGGA TCTTGCAGGT ATTAAACGTA TTGCTGCCGG TACGCAAACT
ATGACGGTGT ATAAACCTAT TACATTGTTG GCAAATACTG CCGCAGAAAT TGCCGTTGAG
TTGGGCAATG GTCAGGAGCC AAAAGCGGAT ACCACACTGA ATAATGGCCT GAAAGATGTT
CCCTCCCGCC TGCTGACACC GATCGATGTG AATAAAAACA ACATCAAAGA TACGGTAGTT
AAAGACGGAT TCCACAAAGA GAGCGAGCTG TAA
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| Protein sequence | MKIKNILLTL CTSLLLTNVA AHAKEVKIGM AIDDLRLERW QKDRDIFVKK AESLGAKVFV
QSANGNEETQ MSQIENMINR GVDVLVIIPY NGQVLSNVVK EAKQEGIKVL AYDRMINDAD
IDFYISFDNE KVGELQAKAL VDIVPQGNYF LMGGSPVDNN AKLFRAGQMK VLKPYVDSGK
IKVVGDQWVD GWLPENALKI MENALTANNN KIDAVVASND ATAGGAIQAL SAQGLSGKVA
ISGQDADLAG IKRIAAGTQT MTVYKPITLL ANTAAEIAVE LGNGQEPKAD TTLNNGLKDV
PSRLLTPIDV NKNNIKDTVV KDGFHKESEL
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