Gene EcSMS35_3885 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3885 
Symbol 
ID6144168 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3953082 
End bp3953519 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content42% 
IMG OID641618711 
Producthypothetical protein 
Protein accessionYP_001745850 
Protein GI170679941 
COG category[S] Function unknown 
COG ID[COG4682] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAACA AAATATCAAC CTATTCACCG GCATTTAGTA TTGTGTCATG GATAGCTCTC 
GTTGGTGGTA TCGTTACCTA TCTGTTAGGA CTATGGAATG CAGAGATGCA GTTAAATGAA
AAAGGATATT ATTTTGCCGT ACTGGTATTA GGACTGTTTT CTGCGGCGTC TTATCAAAAG
ACCGTTCGGG ACAAGTATGA AGGCATACCG ACCACCTCCA TTTATTATAT GACTTGCCTG
ACGGTCTTTA TTATCTCTGT TGCGTTATTG CTGGTAGGTC TGTGGAATGC AACGTTATTA
CTCAGCGAAA AAGGCTTTTA TGGGCTGGCT TTCTTCTTAA GCTTGTTTGG TGCAGTAGCG
GTGCAGAAGA ATATTCGTGA TGCCGGAATA AACCCACCAA AAGAAACACA GGTTACCCAG
GAAGAATACA GCGAATAA
 
Protein sequence
MDNKISTYSP AFSIVSWIAL VGGIVTYLLG LWNAEMQLNE KGYYFAVLVL GLFSAASYQK 
TVRDKYEGIP TTSIYYMTCL TVFIISVALL LVGLWNATLL LSEKGFYGLA FFLSLFGAVA
VQKNIRDAGI NPPKETQVTQ EEYSE