Gene EcSMS35_3880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_3880 
Symbol 
ID6146900 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp3947348 
End bp3948199 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content43% 
IMG OID641618706 
ProductIS150 transposase orfB 
Protein accessionYP_001745845 
Protein GI170683565 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.636384 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones74 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAGTAC TCAACGAGCT AAGGCAGTTT TATCCTCTTG ATGAGCTTCT CAGGGCTGCG 
GAGATACCGC GCAGTACGTT TTATTACCAT CTAAAGGCTC TCAGCAAGCC TGACAAGTAT
GCGGACGTTA AAAAGCGTAT TGGTGAGATT TATCATGAGA ATAGAGGCCG ATACGGATAC
CGTAGGGTAA CGCTGTCTCT TCATCGAGAA GGGAAACAGA TTAACCATAA AGCTGTTCAG
CGCCTGATGG GAATCCTCTC ACTGAAGGCA GCGATTAAGG TCAAGCGATA CCGCTCTTAC
AGAGGAGAGG TAGGGCAAAC CGCCCCCAAT GTTCTCCAAA GAGATTTCAA GGCTACGCGG
CCAAACGAGA AGTGGGTTAC CGATGTTACT GAATTTGCAG TCAATGGGCG CAAGCTGTAT
TTGTCTCCAG TAATAGATCT CTTCAACAAC GAAGTTATTT CTTACAGCCT TTCGGAAAGA
CCAGTGATGA ACATGGTCGA GAATATGCTC GATCAGGCAT TCAAAAAGCT TAATCCTCAC
GAGCATCCTG TTCTGCACTC TGACCAGGGA TGGCAGTATC GTATGAGAAG ATATCAAAAT
ATCCTTAAAG AACATGGTAT TAAACAAAGC ATGTCCAGAA AAGGCAATTG TCTGGATAAT
GCTGTGGTGG AGTGTTTCTT TGGAACCTTA AAGTCGGAGT GTTTTTATCT TGATGAGTTC
AGTAATATAA GCGAGCTGAA GGATGCTGTT ACGGAATATA TTGAATACTA CAACAGCAGA
AGAATTAGCC TGAAATTAAA AGGTCTGACT CCAATTGAAT ATCGGAATCA GACCTATATG
CCTCGTGTTT AA
 
Protein sequence
MKVLNELRQF YPLDELLRAA EIPRSTFYYH LKALSKPDKY ADVKKRIGEI YHENRGRYGY 
RRVTLSLHRE GKQINHKAVQ RLMGILSLKA AIKVKRYRSY RGEVGQTAPN VLQRDFKATR
PNEKWVTDVT EFAVNGRKLY LSPVIDLFNN EVISYSLSER PVMNMVENML DQAFKKLNPH
EHPVLHSDQG WQYRMRRYQN ILKEHGIKQS MSRKGNCLDN AVVECFFGTL KSECFYLDEF
SNISELKDAV TEYIEYYNSR RISLKLKGLT PIEYRNQTYM PRV