Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_3880 |
Symbol | |
ID | 6146900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 3947348 |
End bp | 3948199 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641618706 |
Product | IS150 transposase orfB |
Protein accession | YP_001745845 |
Protein GI | 170683565 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.636384 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 74 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAGTAC TCAACGAGCT AAGGCAGTTT TATCCTCTTG ATGAGCTTCT CAGGGCTGCG GAGATACCGC GCAGTACGTT TTATTACCAT CTAAAGGCTC TCAGCAAGCC TGACAAGTAT GCGGACGTTA AAAAGCGTAT TGGTGAGATT TATCATGAGA ATAGAGGCCG ATACGGATAC CGTAGGGTAA CGCTGTCTCT TCATCGAGAA GGGAAACAGA TTAACCATAA AGCTGTTCAG CGCCTGATGG GAATCCTCTC ACTGAAGGCA GCGATTAAGG TCAAGCGATA CCGCTCTTAC AGAGGAGAGG TAGGGCAAAC CGCCCCCAAT GTTCTCCAAA GAGATTTCAA GGCTACGCGG CCAAACGAGA AGTGGGTTAC CGATGTTACT GAATTTGCAG TCAATGGGCG CAAGCTGTAT TTGTCTCCAG TAATAGATCT CTTCAACAAC GAAGTTATTT CTTACAGCCT TTCGGAAAGA CCAGTGATGA ACATGGTCGA GAATATGCTC GATCAGGCAT TCAAAAAGCT TAATCCTCAC GAGCATCCTG TTCTGCACTC TGACCAGGGA TGGCAGTATC GTATGAGAAG ATATCAAAAT ATCCTTAAAG AACATGGTAT TAAACAAAGC ATGTCCAGAA AAGGCAATTG TCTGGATAAT GCTGTGGTGG AGTGTTTCTT TGGAACCTTA AAGTCGGAGT GTTTTTATCT TGATGAGTTC AGTAATATAA GCGAGCTGAA GGATGCTGTT ACGGAATATA TTGAATACTA CAACAGCAGA AGAATTAGCC TGAAATTAAA AGGTCTGACT CCAATTGAAT ATCGGAATCA GACCTATATG CCTCGTGTTT AA
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Protein sequence | MKVLNELRQF YPLDELLRAA EIPRSTFYYH LKALSKPDKY ADVKKRIGEI YHENRGRYGY RRVTLSLHRE GKQINHKAVQ RLMGILSLKA AIKVKRYRSY RGEVGQTAPN VLQRDFKATR PNEKWVTDVT EFAVNGRKLY LSPVIDLFNN EVISYSLSER PVMNMVENML DQAFKKLNPH EHPVLHSDQG WQYRMRRYQN ILKEHGIKQS MSRKGNCLDN AVVECFFGTL KSECFYLDEF SNISELKDAV TEYIEYYNSR RISLKLKGLT PIEYRNQTYM PRV
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