| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_3838 |
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| Symbol | |
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| ID | 6147336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 3908168 |
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| End bp | 3910117 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641618664 |
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| Product | putative phosphodiesterase |
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| Protein accession | YP_001745804 |
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| Protein GI | 170684297 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 0.261716 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGCAG CCGTTGTCCT GGTGTTCGTT TTTATTTTTT GCACCGTTTT GCTGTTCCAT
CTGGTCCAGC AGAATCGCTA TAACACGGCT ACGCAACTGG AAAGCATTGC TCGCTCTGTC
CGCGAACCCT TATCTTCTGC CATTTTGAAA GGCGATATTC CCGAAGCGGA AGCTATTCTT
GCCAGCATTA AACCGGCAGG CGTGGTCAGC CGTGCCGATG TGGTGCTGCC TAACCAGTTC
CAGGCGCTGC GTAAAAGTTT TATTCCAGAG CGTCCGGTGC CGGTAATGGT TACTCGCCTG
TTTGAGCTAC CGGTGCAAAT CTCGCTGGGC GTTTACTCGC TGGAACGTCC GGCAAACCCG
CAGCCAATTG CCTATCTGGT GCTACAGGCG GATTCCTTCC GCATGTATAA GTTCGTGATG
AGCACCCTCT CAACGTTAGT GACCATTTAC TTACTTTTGT CGTTAATATT GACGGTGGCG
ATTAGCTGGT GCATTAACCG CCTGATTTTG CATCCATTAC GCAATATTGC TCGCGAACTT
AACGCCATCC CAGCCCAGGA GCTTGTTGGT CACCAACTGG CATTACCGCG TCTGCATCAG
GACGATGAAA TCGGTATGTT GGTGCGCAGT TACAACCTCA ACCAGCAATT GCTGCAGCGC
CATTATGAAG AACAGAACGA AAATGCGATG CGCTTCCCGG TGTCGGATTT GCCGAACAAA
GCCTTGCTGA TGGAGATGCT GGAGCAGGTG GTGGCGCGTA AACAAACCAC CGCGCTGATG
ATCATCACCT GTGAAACCCT GCGTGATACT GCGGGTGTGC TGAAAGAGGC GCAACGAGAA
ATTCTGCTGC TGACGCTGGT GGAAAAACTC AAATCGGTAC TGTCGCCACG TATGATCCTC
GCGCAGATTA GCGGTTATGA CTTTGCTGTC ATTGCCAACG GTGTACAGGA ACCGTGGCAC
GCAATCACTT TGGGTCAGCA AGTGCTCACT ATCATGAGCG AGCGCCTGCC GATTGAACGT
ATTCAACTCC GTCCGCACTG TAGCATTGGC GTGGCGATGT TCTACGGCGA TCTCACCGCC
GAACAGCTTT ATAGCCGCGC TATTTCTGCG GCATTTACCG CTCGCCATAA AGGCAAGAAT
CAGATTCAGT TCTTTGATCC GCAGCAGATG GAAGCAGCCC AACAGCGGTT GACGGAAGAG
AGCGATATCC TTAATGCACT GGAAAATCAT CAGTTTGCGA TTTGGTTACA GCCACAGGTC
GAGATGACCA GCGGTAAACT GGTCAGTGCG GAAGTGTTAC TGCGTATCCA GCAACCGGAT
GGCAGTTGGG ATCTGCCGGA TGGCTTAATC GATCGCATTG AATGCTGTGG GCTGATGGTT
ACCGTTGGTC ACTGGGTGCT GGAAGAGTCC TGTCGACTGC TTGCTGCCTG GCAAGAGCGC
GGCATTATGC TGCCCTTGTC GGTAAACCTC TCAGCGCTGC AACTGATGCA CCCGAATATG
GTGGCGGATA TGCTGGAACT GTTAACCCGC TATCGCATTC AGCCGGGAAC ACTGATTCTG
GAAGTGACAG AAAGCCGACG TATTGACGAC CCTCATGCTG CGGTGGCAGT CCTCCGTCCG
CTGCGCAATG CCGGCGTTCG GGTGGCGCTG GATGATTTCG GCATGGGCTA TGCGGGGCTG
CGTCAGCTGC AGCATATGAA ATCGTTGCCA ATCGACGTAC TGAAAATCGA CAAAATGTTT
GTTGAAGGCT TGCCGGAAGA TAGCAGCATG ATTGCTGCAA TTATCATGCT GGCGCAGAGC
CTGAACTTAC AAATGATTGC CGAAGGCGTG GAGACTGAAG CACAACGCGA CTGGCTGGCA
AAAGCGGGCG TTGGTATTGC CCAGGGCTTC CTTTTTGCTC GCCCACTCCC TATTGAAATC
TTCGAAGAGA GTTACCTGGA AGAAAAGTAG
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| Protein sequence | MVAAVVLVFV FIFCTVLLFH LVQQNRYNTA TQLESIARSV REPLSSAILK GDIPEAEAIL
ASIKPAGVVS RADVVLPNQF QALRKSFIPE RPVPVMVTRL FELPVQISLG VYSLERPANP
QPIAYLVLQA DSFRMYKFVM STLSTLVTIY LLLSLILTVA ISWCINRLIL HPLRNIAREL
NAIPAQELVG HQLALPRLHQ DDEIGMLVRS YNLNQQLLQR HYEEQNENAM RFPVSDLPNK
ALLMEMLEQV VARKQTTALM IITCETLRDT AGVLKEAQRE ILLLTLVEKL KSVLSPRMIL
AQISGYDFAV IANGVQEPWH AITLGQQVLT IMSERLPIER IQLRPHCSIG VAMFYGDLTA
EQLYSRAISA AFTARHKGKN QIQFFDPQQM EAAQQRLTEE SDILNALENH QFAIWLQPQV
EMTSGKLVSA EVLLRIQQPD GSWDLPDGLI DRIECCGLMV TVGHWVLEES CRLLAAWQER
GIMLPLSVNL SALQLMHPNM VADMLELLTR YRIQPGTLIL EVTESRRIDD PHAAVAVLRP
LRNAGVRVAL DDFGMGYAGL RQLQHMKSLP IDVLKIDKMF VEGLPEDSSM IAAIIMLAQS
LNLQMIAEGV ETEAQRDWLA KAGVGIAQGF LFARPLPIEI FEESYLEEK
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