Gene EcSMS35_3765 details

Gene Information

• Locus tag: EcSMS35_3765
• Symbol: nikR
• ID: 6144419
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: +
• Start bp: 3830336
• End bp: 3830737
• Gene Length: 402 bp
• Protein Length: 133 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 641618591
• Product: nickel responsive regulator
• Protein accession: YP_001745731
• Protein GI: 170679661
• COG category: [K] Transcription
• COG ID: [COG0864] Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
• TIGRFAM ID: [TIGR02793] nickel-responsive transcriptional regulator NikR

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 63
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAACGAA TCACCATCAC GCTTGATGAC GATTTACTGG AGACGCTGGA CAGCCTGAGC 
CAGCGTCGTG GCTATAACAA CCGTTCCGAA GCTATCCGCG ATATTCTGCG TAGCGCCCTG 
GCGCAAGAGG CCACCCAGCA GCACGGCACA CAAGGTTTCG CAGTGCTCTC CTATGTGTAT 
GAACACGAAA AACGCGACTT AGCCAGCCGT ATTGTCTCCA CCCAGCACCA TCACCACGAT 
CTCTCGGTCG CCACGCTGCA TGTGCACATT AATCACGACG ACTGTCTGGA AATCGCCGTG 
CTGAAAGGTG ACATGGGCGA CGTGCAGCAT TTTGCCGATG ACGTTATCGC CCAGCGCGGC 
GTGCGGCACG GGCATTTGCA GTGCTTGCCG AAGGAAGATT AA 

 

Protein sequence

MQRITITLDD DLLETLDSLS QRRGYNNRSE AIRDILRSAL AQEATQQHGT QGFAVLSYVY 
EHEKRDLASR IVSTQHHHHD LSVATLHVHI NHDDCLEIAV LKGDMGDVQH FADDVIAQRG 
VRHGHLQCLP KED